Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05334 ATGGCTACCAACGCTACCACTCTCTCTCTTTCCTTCGCCACAACCTCTTCTTCTTCCTCGTTACCCAGCTATAAACCTTTATTTTCAAAACGATCCGTTTCATTTTCTACGGTGCCTTATCTTGTTGTCAGTCACAGCTCCAAGCCTAGGGTTTCCACTCCCTTTGCCTTAGCGGCTGTCGTCAATGACCAAACCGCAATCGTCGATGGAGAACAAAAACCACGGAAGCTCGGAAATCCGACTCCAGTTTACGTTTGCAATCTTCCTAGAAGCTGTGACAATCAACAACTAATTCAAATCTTCACTCCTCATGGAACCGTTCTATCTGCGGAGGTTTGTCGGAATGCTGAGACAGGTGAGAGTAAAGGAAGTGCTTATGTAACTATGGGATCTTATAATGCTGCTAAAAATGCAATTGATGCATTGGATGGATTGGATGTTGGTGGACGTGAAGTGCGGGTTAAATTTTCAATTCAGATGAATACTAAGAAGAAGAATTCAGAGACGTTGAATCCATCTCCGTGGAGAACTATATACTATGAAGGTCCTTATAAGGTGTATATTGGGAATCTTGCTAGGTCTACTACACCTGAAGATTTGAGAAATCTCTTTGGTAAATTTGGAAATGTGGCTAGTGCGAGGGTGTTGCACGATTTTAAACAGGGGAAAAACCGAGTCTACGCCTTTGTATCTTATCTTACTCAGACAGAACGTGACGCCTCGTTGTCACTCAATGGAACTGAATTTGATAGTCGAAGTCTAGTGGTTAGAGAAGGCGTGGAGAAGACAGTGACGTAA 798 0.4311 MATNATTLSLSFATTSSSSSLPSYKPLFSKRSVSFSTVPYLVVSHSSKPRVSTPFALAAVVNDQTAIVDGEQKPRKLGNPTPVYVCNLPRSCDNQQLIQIFTPHGTVLSAEVCRNAETGESKGSAYVTMGSYNAAKNAIDALDGLDVGGREVRVKFSIQMNTKKKNSETLNPSPWRTIYYEGPYKVYIGNLARSTTPEDLRNLFGKFGNVASARVLHDFKQGKNRVYAFVSYLTQTERDASLSLNGTEFDSRSLVVREGVEKTVT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05334 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Vivi6g05334 265 SUPERFAMILY RNA-binding domain, RBD 68 162 IPR035979 GO:0003676
Vivi6g05334 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Vivi6g05334 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 153 IPR000504 GO:0003723
Vivi6g05334 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 261 IPR000504 GO:0003723
Vivi6g05334 265 PANTHER OS02G0815200 PROTEIN 17 257 - -
Vivi6g05334 265 SMART rrm1_1 82 155 IPR000504 GO:0003723
Vivi6g05334 265 SMART rrm1_1 185 257 IPR000504 GO:0003723
Vivi6g05334 265 SUPERFAMILY RNA-binding domain, RBD 178 261 IPR035979 GO:0003676
Vivi6g05334 265 Gene3D - 59 169 IPR012677 -
Vivi6g05334 265 Gene3D - 176 263 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05334 Vivi-Chr6 158194213 158195845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05334 83 263 Eukaryotic Initiation Factors Gene Family AT1G22760 31.319 6.39e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05334 - - tpra:123889530 306.605