Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05331 ATGTCGCTTGGAGAAACTGCTTGCTCTTACGCCCTTCTCATCCTTGAAGATGATAAAATTGCCGTCACTGCTGACAATATCACCACTTTGTTGAAAAGTGCAAAGGTTGAAGTTGAATCATATTGGCCCAGCCTTTTTGTTAAACTTGCTGAGAAGAAGAATATTAAGGATTTGATTGCCAGTGCTGCCGGTGCTGGAGCTCCAGGAGCTGTTGCCGCTACTCCACTTGCTGCTTCAGGTGGTGGTGCTGCTGCTGCTCCAGTTGTTGAGGAGAAGAAGGAGGAACCAAAAGAAGAGAGTGATGATGACATGGGATTTAGCTTGTTTGATTAG 333 0.4565 MSLGETACSYALLILEDDKIAVTADNITTLLKSAKVEVESYWPSLFVKLAEKKNIKDLIASAAGAGAPGAVAATPLAASGGGAAAAPVVEEKKEEPKEESDDDMGFSLFD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05331 110 MobiDBLite consensus disorder prediction 79 110 - -
Vivi6g05331 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Vivi6g05331 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Vivi6g05331 110 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vivi6g05331 110 CDD Ribosomal_P1 5 59 - -
Vivi6g05331 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vivi6g05331 110 MobiDBLite consensus disorder prediction 88 104 - -
Vivi6g05331 110 Gene3D - 1 62 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05331 Vivi-Chr6 158171632 158172592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05331 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 53.097 3.82e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05331 K02942 - egr:104424551 119.012