Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05325 ATGTCGGAAGGTGCTGAAATTGACGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAAATGGATGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGGTGAAGAAATTGATTACGAGGAGTCAGCGGTAGAGGCTGGTGGGAAGGAACAATTTCCTGAAGGAGAGAAGAGTGACCGTGCCACTGAAGAAGACGAGCGAAAATCACCTCTCATTGATGAGGAGGAAAGAGAGAAGTACGATAAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTATTTATTGGTGGACTTCCTCGGGATACATGTGATGATGATTTAAGGGAATTGTGTGAGCCAATGGGAGACATTGTTGAGATTAAATTAATCAAAGACAGGGACACCGGAGACAGTAAGGGTTATGCTTTCGTGGCTTTTAAAACAAAGGAGGAGGCACAAAAGGCCATTGATGATATACATAACAAGGAATTTAAGAGCAAAACTTTGAGGTGTTCGCTGTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAGCATGGACAGAGGATGAGTTTAGGAAAGCCGTGGAGGCTGTTGGTCCAGGGGTTGAAAGTATTGACCTCATAAAGGACCCTCAAAATCAAAGCAAAAATCGGGGGTTTGCTTTTGTTTTGTATTACAATAATGCTTGTGCTGATTATTCACGACAAAAGATGTCAAATTCAAATTTCAAGCTAGATGGAAATACACCAACTGTGACATGGGCAGATCCCAAGACCTCACCCGACAGTTCTGCTGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCCGAGAATGTTACTACAGATCAACTAAAGGAGCTATTTCGTCGTCACGGGGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCACTGAAAGCTGTAAAAGAGACAGAAAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGGGTACAATCCCGGACTCCATCCTACCCATCTTCCACATCCTGGTTATGGTAACTTTTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTGCTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTTTTACCAGATGGCCGAATTGGTTATGTCCTCCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCCCGCAGAAATGACCGTGGAAATGGTCCAGGTGGTCAGCCAGGGCGTGGAGGAGGTAGTAGTAATGATGAAGGAAATCGTAACAGAAGGTATCGGCCATATTAG 1446 0.4405 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSGEEIDYEESAVEAGGKEQFPEGEKSDRATEEDERKSPLIDEEEREKYDKLLALPPHGSEVFIGGLPRDTCDDDLRELCEPMGDIVEIKLIKDRDTGDSKGYAFVAFKTKEEAQKAIDDIHNKEFKSKTLRCSLSETKHRLFIGNVPKAWTEDEFRKAVEAVGPGVESIDLIKDPQNQSKNRGFAFVLYYNNACADYSRQKMSNSNFKLDGNTPTVTWADPKTSPDSSAASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYGYNPGLHPTHLPHPGYGNFSGNLYGSVGAGYGVAAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQPGRGGGSSNDEGNRNRRYRPY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05325 481 Gene3D - 267 387 IPR012677 -
Vivi6g05325 481 SMART rrm2_1 105 178 IPR003954 GO:0003676
Vivi6g05325 481 Gene3D - 185 265 IPR012677 -
Vivi6g05325 481 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 184 - -
Vivi6g05325 481 MobiDBLite consensus disorder prediction 1 91 - -
Vivi6g05325 481 SUPERFAMILY RNA-binding domain, RBD 100 184 IPR035979 GO:0003676
Vivi6g05325 481 CDD RRM_SF 106 178 - -
Vivi6g05325 481 SMART rrm1_1 281 353 IPR000504 GO:0003723
Vivi6g05325 481 SMART rrm1_1 105 178 IPR000504 GO:0003723
Vivi6g05325 481 SMART rrm1_1 185 262 IPR000504 GO:0003723
Vivi6g05325 481 MobiDBLite consensus disorder prediction 440 481 - -
Vivi6g05325 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Vivi6g05325 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Vivi6g05325 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
Vivi6g05325 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Vivi6g05325 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Vivi6g05325 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Vivi6g05325 481 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 185 265 - -
Vivi6g05325 481 MobiDBLite consensus disorder prediction 55 91 - -
Vivi6g05325 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 469 - -
Vivi6g05325 481 MobiDBLite consensus disorder prediction 8 54 - -
Vivi6g05325 481 SUPERFAMILY RNA-binding domain, RBD 184 360 IPR035979 GO:0003676
Vivi6g05325 481 Gene3D - 10 184 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05325 Vivi-Chr6 158040622 158046893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05325 106 457 Eukaryotic Initiation Factors Gene Family AT2G23350 25.648 1.39e-19 90.1