Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05317 ATGGGTCAGTGTTACGGCAAGACTTCTCCCGGCGCCGGCAACAGTAACGGTAACGATGACGAAAATCACCATGGCAGAGAAAACGCAACCACCATAATTGCTACCACCGAGTATCATCGTTCTCCGGTAACGATTCCGTCTGTGAAGACTACTCCAGCTCGGTCCTCCTCGCACGCTAGTCCGTGGCCTAGTCCCTATCCTCATGGCGTTAACCCGAGTCCTTCGCCAGCTAGGACGTCGACGCCGAGGAGATTTTTCCGGCGGCCGTTTCCGCCGCCTTCTCCGGCGAAGCATATAAGGGAGTCGTTGGCGAAGAGGCTGGGGAAGGGGAAGCCGAAGGAGGGACCGATACCGGAGGAGAGAGGTGTGGAGGTGGATTCGCAGTCGCTTGATAAGAGTTTTGGGTATAGTAAGAATTTTGGTGCTAAGTATGAGTTGGGGAAGGAAGTGGGACGAGGGCATTTTGGTCATACTTGTTCAGCTAGGGCTAAGAAAGGTGATCTTAAAGACCAACCTGTTGCTGTTAAGATCATTTCCAAGTCCAAGATGACCACAGCAATAGCAATTGAAGATGTTCGAAGAGAAGTAAAGCTGTTGAAAGCTCTGTCAGGCCATAAGCATCTTGTCAAATTTCACGATGCTTGTGAGGATGCCAATAATGTCTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGAGGAGGAAGGTATACCGAGGAGGATGCAAAAGTTATTGTTTTGCAGATTCTAAGTGTAGCTGCTTTTTGTCATCTTCAAGGTGTCGTGCATCGTGACCTGAAGCCTGAGAATTTTCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTGATTGATTTTGGTCTGTCTGACTTCATTAGGCCAGAGGAGCGGTTGAATGACATTGTCGGGAGTGCATATTATGTTGCACCCGAAGTCCTTCACAGGTCTTACAGTGTGGAAGCAGATATATGGAGTATTGGTGTTATCACCTTCATCTTATTATGCGGAAGTCGTCCATTCTGGGCACGAACAGAATCTGGAATCTTTCGTACGGTTCTCAGAGCTGATCCTAACTTCGATGACTTACCTTGGCCATCTGTGTCTCCAGAGGCCAAGGACTTCGTTAAAAGGCTCCTTAACAAGGACTACCGAAAAAGAATGACAGCCGCTCAAGCTCTAACTCACCCTTGGTTGAGGGACGAAAGCCATCCTATCCCTTTAGATATACTGATTTATAAGTTGGTGAAATCCTATCTCCACGCGACACCATTCAAACGTGCAGCAGTGAAGGCTCTTTCGAAAGCATTGACGGAGGAGCAGCTAGTGTATCTTAGAGCACAATTCAGATTGTTGGAACCAAATAGTAACGGGCATGTCTCCCTCGACAACTTCAAAATGGCTCTTGCACGCCATGCAACTGAAGCCATGAGGGAATCGAGGGTTCTTGACATCATACATACGATGGAACCACTTGCCTATAGAAAGATGGATTTCGAAGAATTTTGTGCAGCTGCAACGAGCACATATCAACTGGAGGCACTTGATCGGTGGGAAGATATTGCCTGCACTGCATTTGAGCATTTCGAGAGTGAGGGAAACCGAGTAATATCGATCGAAGAATTAGCAAGAGAGCTAAATCTTGGTCCTTCGGCGTATTCAGTTCTCAGAGATTGGATTCGAAATACTGACGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTGCATGGCGTGACTCTGCGGAGTTCTGTTCCCAGACCTCGTCAATCTTGA 1797 0.4691 MGQCYGKTSPGAGNSNGNDDENHHGRENATTIIATTEYHRSPVTIPSVKTTPARSSSHASPWPSPYPHGVNPSPSPARTSTPRRFFRRPFPPPSPAKHIRESLAKRLGKGKPKEGPIPEERGVEVDSQSLDKSFGYSKNFGAKYELGKEVGRGHFGHTCSARAKKGDLKDQPVAVKIISKSKMTTAIAIEDVRREVKLLKALSGHKHLVKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVAAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPEERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITFILLCGSRPFWARTESGIFRTVLRADPNFDDLPWPSVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDESHPIPLDILIYKLVKSYLHATPFKRAAVKALSKALTEEQLVYLRAQFRLLEPNSNGHVSLDNFKMALARHATEAMRESRVLDIIHTMEPLAYRKMDFEEFCAAATSTYQLEALDRWEDIACTAFEHFESEGNRVISIEELARELNLGPSAYSVLRDWIRNTDGKLSLLGYTKFLHGVTLRSSVPRPRQS 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05317 598 FunFam CDPK-related kinase 1 442 514 - -
Vivi6g05317 598 Pfam Protein kinase domain 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05317 598 CDD STKc_CAMK 143 405 - -
Vivi6g05317 598 ProSiteProfiles Protein kinase domain profile. 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05317 598 FunFam Calcium-dependent protein kinase SK5 316 413 - -
Vivi6g05317 598 SUPERFAMILY EF-hand 432 585 IPR011992 -
Vivi6g05317 598 FunFam CDPK-related kinase 3 136 308 - -
Vivi6g05317 598 MobiDBLite consensus disorder prediction 1 126 - -
Vivi6g05317 598 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Vivi6g05317 598 MobiDBLite consensus disorder prediction 28 62 - -
Vivi6g05317 598 Gene3D - 424 586 - -
Vivi6g05317 598 SUPERFAMILY Protein kinase-like (PK-like) 143 432 IPR011009 -
Vivi6g05317 598 ProSitePatterns Protein kinases ATP-binding region signature. 150 176 IPR017441 GO:0005524
Vivi6g05317 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Vivi6g05317 598 PANTHER SERINE/THREONINE-PROTEIN KINASE 128 571 - -
Vivi6g05317 598 SMART serkin_6 144 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05317 598 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Vivi6g05317 598 Gene3D Transferase(Phosphotransferase) domain 1 233 416 - -
Vivi6g05317 598 MobiDBLite consensus disorder prediction 99 126 - -
Vivi6g05317 598 FunFam CDPK-related kinase 1 137 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05317 Vivi-Chr6 157931646 157937747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05317 61 590 EF-hand Containing Proteins AT3G50530 62.587 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi6g05317 Pkinase 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05317 K13412 - qsa:O6P43_027422 979.163