Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05312 ATGGTTATCTTCATTTGTAACCCCGTTTTCTTCACTATCGCAATCCTCTTAATCTCAATTTGGGCGATACATAAATTTTTCGAAATTGAAACGGTCAAGAGACACTGGAGAAACATCGAAGATTTCTTCCACGTGTATCACGTGTTCAATGTTCCAGAGCTAAACGACAACATGCAGTACAACACTTTCTACAGAAAACTCTCTATATACCTTCATTCACTTCCTTCCCTCCAAGACTCCTACTCCAATAAACTAATCACTTCCGATAATAACCAAAACGACGTCGTTCTCAGCCTCGCCCCAAACCAAACCGTTCAAGACCATTATCATGGAGCCATTCTCTACTGGTTCAACCAAACCGAACCGAACCGGACCTTCATTCTCAAGATCAAAAGAATCGATAAACGACGAATCCTTCGTCTTTATCTTCAACACATTCACGCCGTCGTTGACGAAATCGAGAAACAACGGAAGCCTGATTTGCGCCTTTACATGAACGTTAATGCCGGTGCCGGTGCACGATGGAGATTTATTCCGTTCAATCACCCTTCGACCTTTGAAACAATCACAATGGAATCAGATCTCAAGAACAAACTCAAATCCGATCTAGAATCGTTCCTCAAAGGAAAACAATACTATCATCGGAACGGCCGTATCTGGAAACGAAGCTTCCTGTTATACGGTTCTTCCGGCACCGGAAAATCCACCTTCGTTGCCGCCATGGCCAATTTCCTCTCCTACGATATCTACCACATGGACCTATCAAAACTTCACACCGATTCAGATCTCAAATCTCTCTTCCTCCAAACAACGCCGAAATCGATTATTCTCGTCGAGGATCTAGATCGGTTTCTCGCCGTGCAATCTTCAACGGCGTTGAGTTTATCTGCGATGTTGAATTTCATGGACGGAATATGTAACGGAGAAGAGAGAGTTATGGTTTTCACGATGAATAGCAAAGACAATGTAGATCCGGATCTTCTTCGTCCGGGTCGGGTCGACGTACATATCCATTTTCCTCTCTGTGATTTCTCATCCTTCAAATTGCTTGCTAGTAACTACCTTGGTGTGAAGGATCACAAGCTATTCCCTCAGGTGGAAGAAACGTTTCAAAACGGAGCGAGTTTGAGTCCAGCGGAAATCGGTGAGTTGATGATCACGAATCGTAACTCACCGAGTCGGGCGATTAAATCAGTCATCACAGCTTTGAAAACGGACGGTGATGGAAGGGGGTGCAAATCAATCGAACGGCGCAGAGGGAATGATGGTGATGATGACGTGGGTGAGTATGCAAGTGATCATTCATTTAAAGAAAGAAAGAAACTTTATGGGTTCTTAAAATCGAGGGCTTCCAGAAGAAAATCCTGTTCGTCGTCGCCGAATAACAGTGCATTGGGAAGTCCGTTACGAATATGTAACTCATGA 1425 0.4386 MVIFICNPVFFTIAILLISIWAIHKFFEIETVKRHWRNIEDFFHVYHVFNVPELNDNMQYNTFYRKLSIYLHSLPSLQDSYSNKLITSDNNQNDVVLSLAPNQTVQDHYHGAILYWFNQTEPNRTFILKIKRIDKRRILRLYLQHIHAVVDEIEKQRKPDLRLYMNVNAGAGARWRFIPFNHPSTFETITMESDLKNKLKSDLESFLKGKQYYHRNGRIWKRSFLLYGSSGTGKSTFVAAMANFLSYDIYHMDLSKLHTDSDLKSLFLQTTPKSIILVEDLDRFLAVQSSTALSLSAMLNFMDGICNGEERVMVFTMNSKDNVDPDLLRPGRVDVHIHFPLCDFSSFKLLASNYLGVKDHKLFPQVEETFQNGASLSPAEIGELMITNRNSPSRAIKSVITALKTDGDGRGCKSIERRRGNDGDDDVGEYASDHSFKERKKLYGFLKSRASRRKSCSSSPNNSALGSPLRICNS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05312 474 MobiDBLite consensus disorder prediction 453 474 - -
Vivi6g05312 474 Gene3D - 176 337 IPR027417 -
Vivi6g05312 474 Gene3D - 338 404 - -
Vivi6g05312 474 PANTHER BCS1 AAA-TYPE ATPASE 41 404 - -
Vivi6g05312 474 SMART AAA_5 220 343 IPR003593 GO:0016887
Vivi6g05312 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 402 IPR027417 -
Vivi6g05312 474 Pfam ATPase family associated with various cellular activities (AAA) 225 341 IPR003959 GO:0005524|GO:0016887
Vivi6g05312 474 Pfam Domain associated at C-terminal with AAA 33 116 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05312 Vivi-Chr6 157854773 157856658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05312 179 355 Miscellaneous Gene Families AT5G53170 26.984 1.62e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05312 6 157854773 157856658 Vivi7g04218 7 110380222 110382121 PCT