Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05304 ATGGTGCTCGATTCGTTGATTTCTGGTCCTGCTTCGGAAGCTATTTCTCAGATTATAGATTTGGTTTCGGAGTTTGTGTGTTCTGTTGACAATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCGGATTACTTGCAAAGAATTGAACCTATTTTGAGGCAGTTGAGGAAGGAGAAGGTTAGTGATTCTGAGACATTCAACCATGCCATTGAGATTCTGAATCGTGAAATCAAAGATGCGAAGAAATTGGTTCAGGAATGTTGCAAGAAGAGCAAGGTGTATCTTTTAGTGAACTGTAGAACGGTTGTTAAGCGCTTGAAACATAATACGGGTGAGATCAGCAGGGCACTTGGTCTTCTTCCTTTGGCTACGTCGGGTCTTTCGGCTGGAATAGTTGAAGAGATTAAGAAGTTATGTGATAATATGCAGGAAGCTGAGTTTAAGGCAGCTGTATCGGAAGAGGAGATCTTAGAGAAAATTGAGGCGGGGATACATGAAAAGAATTTCGACCGCTCGTATGCAAATAATTTGCTGCATCTCATTGCAGATGCTGTTGGGATTACAAAAGAGCGGTCGGAATTAAAAAAAGAGCTTGAAGAGTTTAAAAATGAAATTGAAAACGAGAAAGATCGGGCTGAAGCCATACAGATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCTTCATCGACTCGGGAAAAGGAGCTCAAGTACTTTGCAAAACGTAATTCTTTGGGTACTCAACCCTTGGAGCCTTTGCATTCCTTTTATTGCCAGATTACAGGCGATGTTATGGTTGACCCCGTGGAAATTTCGTCGGGGCAAACCTTTGAAAGAAGTGCAATTGAAAAGTGGTTTGCAGAAGGACACAAAAAGTGTCCTCTGACTTCCATTACTCTAGACACATTGGTTTTGAGACCTAACAAAACCTTGAAACAGTCAATAGAAGAATGGAAAGATAGAAATACGATGATTACAATTGCTTTGCTGAAAGACAAAATCCAGTCTGGAGATGAAGCTGGAGTATTAAGTTGTTTGCAAACTCTTCAAGATTTGTGCGAACAGAAAGATCAGCACAGAGAATGGGTGGTGCTGGAGAATTATATACCTGTTCTTATCCAAATTCTTGCTGAAAAAAACCGAGATAAAAGGAACCGTGTCCTTCGCATCCTTTGCTTGCTGGTGAAGGATAATGAAGATGCCAAGGAAAGAATTGTAAATGTTGATAATGCAATCGAGTTTATTGTCCATTCTCTTGGGCGTCGTTTGGTGGAAGGGAAGTTGGCAGTGGAATTACTATTGGAACTATCCAAATATGATTTTTTTAGAGAGTACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGACAATCAAGCGGCCAGAGATGCAACGGAGTTACTGGAGAAGCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAACATTTATTGCAGCGTCTATCCACAGGAACAGATGATGTGAAGATGGTTATGGTCAAAATGTTAGCAGAAATGGAGTCGACAGACCACAATAAGGAGGTCTTGTTTGACAACGGTATTCTGGCTCCTCTTCTTCGCTTAGTCTCACATAACGATGTTCAGATGAAACTAGTTGCGCTTAAAGCTCTTCAGAATCTATCTAGTTTAAAGAAAAATGGACTCGAAATGATTCGACAAGGTGCAGCACGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCATTCCTCAAGTTTGTGTGAACATGTAGCTCCCATAATTATGCAACTCGCTGAATCTACCATCTCTCAGGATACACAGACGCCGGTTTCATTGTTAGAATCCGATGAAGAAGTTTTTAACCTTTTTTCTCTTGTTAGCTATATTCAGCCTGATGTGCGACAATATATTATCCAGACTTTTTATGCATTGTGTCAGTCGCCTTCAGCTTCATATATCAGGAACAAGCTAAGAGAGTGTCCATCGGTTCAAGTATTGGTCAAGTTGTTTGAGAATGAAAACCTAATTCTTCGAGCAAGTGCTGTGAAGCTGTTCTCTTGCCTGGTAGAAAGTTCTGATGAAGCCACCATACTGGAGCATGTGAATCAGAAGTGTATTGATACTTTACTCCAGATCCTGAAACCTCCATCTGATGAAGAGGAAGTTGTTTCTGCTATGGGAATAATATGCTATCTTCCAAAAATTCCACAAATCACTCAGTGGCTTTTGGATAGCGGGGCGCTGCCAACCATTTGTACCTATATCCAACAAGGGAAGGACAAAGATCTCCTAAAGAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGACTGCGGCTGAAACCGGGATTATAACTGTTTTAGTACAGTTGCTTGAAAGTGGATCTACTCCAACAAAACAGCTAGCGGCACAGTCGCTAACTCAATTTTCTAAAAGCTCAAACGAACTAAGCATTCCAGTGCCGAAGCGAAGGGGATTTTGGTGCTTCTCAGCTCAAGCAGAAGCAGTATGCTTAGTTCATGGTGGTATATGCACTGTGGAATCATCATTTTGCCTTTTGGAGGCTGATGCCGTGGGACCACTAGCAAAGACTCTTAGAGAATCTGATTCTGGAGTGTGTGAGACTTCTTTAGACGCTCTTCTAACTTTAATTGAAGGAGAAAAGCTACAGAACGGTAGTAAAGTGCTTGCAGATGAAGATGTCATACCATTGATAATAAGATTTCTCGGTTCCCCTTCCCCCGGATTGCAAGAAAAGTCTCTTAATGCTTTGGAAAGGATTTTCCGACTATTCGAGTTCAAACAGAAATATGGAGCTTCAGCTCAAATGCCTCTGGTTGACTTAACTCAGCGGGGTAATGGTAGCGTTAAATCCTTGGCAGCTCGAATATTAGCACATTTGAACGTGCTTCACGATCAATCTTCATATTTCTAA 3003 0.4096 MVLDSLISGPASEAISQIIDLVSEFVCSVDNVLVKKDSFKELADYLQRIEPILRQLRKEKVSDSETFNHAIEILNREIKDAKKLVQECCKKSKVYLLVNCRTVVKRLKHNTGEISRALGLLPLATSGLSAGIVEEIKKLCDNMQEAEFKAAVSEEEILEKIEAGIHEKNFDRSYANNLLHLIADAVGITKERSELKKELEEFKNEIENEKDRAEAIQMDQIIALLERSDAASSTREKELKYFAKRNSLGTQPLEPLHSFYCQITGDVMVDPVEISSGQTFERSAIEKWFAEGHKKCPLTSITLDTLVLRPNKTLKQSIEEWKDRNTMITIALLKDKIQSGDEAGVLSCLQTLQDLCEQKDQHREWVVLENYIPVLIQILAEKNRDKRNRVLRILCLLVKDNEDAKERIVNVDNAIEFIVHSLGRRLVEGKLAVELLLELSKYDFFREYIGKVQGCILLLVTMSSSEDNQAARDATELLEKLSYSDQNVIQMAKANYFKHLLQRLSTGTDDVKMVMVKMLAEMESTDHNKEVLFDNGILAPLLRLVSHNDVQMKLVALKALQNLSSLKKNGLEMIRQGAARLLFGILFQHSLHSSSLCEHVAPIIMQLAESTISQDTQTPVSLLESDEEVFNLFSLVSYIQPDVRQYIIQTFYALCQSPSASYIRNKLRECPSVQVLVKLFENENLILRASAVKLFSCLVESSDEATILEHVNQKCIDTLLQILKPPSDEEEVVSAMGIICYLPKIPQITQWLLDSGALPTICTYIQQGKDKDLLKSKLVENSVGALCRFTVPTNLEWQKTAAETGIITVLVQLLESGSTPTKQLAAQSLTQFSKSSNELSIPVPKRRGFWCFSAQAEAVCLVHGGICTVESSFCLLEADAVGPLAKTLRESDSGVCETSLDALLTLIEGEKLQNGSKVLADEDVIPLIIRFLGSPSPGLQEKSLNALERIFRLFEFKQKYGASAQMPLVDLTQRGNGSVKSLAARILAHLNVLHDQSSYF 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05304 1000 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vivi6g05304 1000 CDD RING-Ubox_PUB 259 308 IPR045210 -
Vivi6g05304 1000 Coils Coil 185 219 - -
Vivi6g05304 1000 Gene3D - 627 843 IPR011989 -
Vivi6g05304 1000 SUPERFAMILY RING/U-box 246 327 - -
Vivi6g05304 1000 Coils Coil 136 156 - -
Vivi6g05304 1000 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Vivi6g05304 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 329 IPR013083 -
Vivi6g05304 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1000 - -
Vivi6g05304 1000 SMART arm_5 525 565 IPR000225 GO:0005515
Vivi6g05304 1000 SMART arm_5 702 741 IPR000225 GO:0005515
Vivi6g05304 1000 SMART arm_5 912 952 IPR000225 GO:0005515
Vivi6g05304 1000 SMART arm_5 745 791 IPR000225 GO:0005515
Vivi6g05304 1000 SMART arm_5 794 834 IPR000225 GO:0005515
Vivi6g05304 1000 Coils Coil 71 91 - -
Vivi6g05304 1000 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vivi6g05304 1000 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Vivi6g05304 1000 SUPERFAMILY ARM repeat 330 990 IPR016024 -
Vivi6g05304 1000 Gene3D - 428 626 IPR011989 -
Vivi6g05304 1000 Gene3D - 330 427 IPR011989 -
Vivi6g05304 1000 CDD MLKL_NTD 9 126 - -
Vivi6g05304 1000 Gene3D - 11 126 IPR036537 GO:0007166
Vivi6g05304 1000 Pfam Armadillo/beta-catenin-like repeat 525 565 IPR000225 GO:0005515
Vivi6g05304 1000 Gene3D - 853 998 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05304 Vivi-Chr6 157745094 157750280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05304 258 1000 U-box Gene Family AT1G76390 27.411 4.77e-59 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05304 - - gmx:100799969 1382.47