Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05303 ATGGTGCTCGATTCGTTGATTTCTGGTCCTGCTTCGGAAGCTATTTCTCAGATTATAGATTTGGTTTCGGAGTTTGTGTGTTCTGTTGACAATGTTCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCGGATTACTTGCAAAGAATTGAACCTATTTTGAGGCAGTTGAGGAAGGAGAAGGTTAGTGATTCTGAGACATTCAACCATGCCATTGAGATTCTGAATCGTGAAATCAAAGATGCGAAGAAATTGGTTCAGGAATGTTGCAAGAAGAGCAAGGTGTATCTTTTAGTGAACTGTAGAACGGTTGTTAAGCGCTTGAAACATAATACGGGTGAGATCAGCAGGGCACTTGGTCTTCTTCCTTTGGCTACGTCGGGTCTTTCGGCTGGAATAGTTGAAGAGATTAAGAAGTTATGTGATAATATGCAGGAAGCTGAGTTTAAGGCAGCTGTATCGGAAGAGGAGATCTTAGAGAAAATTGAGGCGGGGATACATGAAAAGAATTTCGACCGCTCGTATGCAAATAATTTGCTGCATCTCATTGCAGATGCTGTTGGGATTACAAAAGAGCGGTCGGAATTAAAAAAAGAGCTTGAAGAGTTTAAAAATGAAATTGAAAACGAGAAAGATCGGGCTGAAGCCATACAGATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCTTCATCGACTCGGGAAAAGGAGCTCAAGTACTTTGCAAAACGTAATTCTTTGGGTACTCAACCCTTGGAGCCTTTGCATTCCTTTTATTGCCAGATTACAGGCGATGTTATGGTTGACCCCGTGGAAATTTCGTCGGGGCAAACCTTTGAAAGAAGTGCAATTGAAAAGTGGTTTGCAGAAGGACACAAAAAGTGTCCTCTGACTTCCATTACTCTAGACACATTGGTTTTGAGACCTAACAAAACCTTGAAACAGTCAATAGAAGAATGGAAAGATAGAAATACGATGATTACAATTGCTTTGCTGAAAGACAAAATCCAGTCTGGAGATGAAGCTGGAGTATTAAGTTGTTTGCAAACTCTTCAAGATTTGTGCGAACAGAAAGATCAGCACAGAGAATGGGTGGTGCTGGAGAATTATATACCTGTTCTTATCCAAATTCTTGCTGAAAAAAACCGAGATAAAAGGAACCGTGTCCTTCGCATCCTTTGCTTGCTGGTGAAGGATAATGAAGATGCCAAGGAAAGAATTGTAAATGTTGATAATGCAATCGAGTTTATTGTCCATTCTCTTGGGCGTCGTTTGGTGGAAGGGAAGTTGGCAGTGGAATTACTATTGGAACTATCCAAATATGATTTTTTTAGAGAGTACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGTGAGGACAATCAAGCGGCCAGAGATGCAACGGAGTTACTGGAGAAGCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAGGCAAATTATTTCAAACATTTATTGCAGCGTCTATCCACAGATGATGTGAAGATGGTTATGGTCAAAATGTTAGCAGAAATGGAGTCGACAGACCACAATAAGGAGGTCTTGTTTGACAACGGTATTCTGGCTCCTCTTCTTCGCTTAGTCTCACATAACGATGTTCAGATGAAACTAGTTGCGCTTAAAGCTCTTCAGAATCTATCTAGTTTAAAGAAAAATGGACTCGAAATGATTCGACAAGGTGCAGCACGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCATTCCTCAAGTTTGTGTGAACATGTAGCTCCCATAATTATGCAACTCGCTGAATCTACCATCTCTCAGGATACACAGACGCCGGTTTCATTGTTAGAATCCGATGAAGAAGTTTTTAACCTTTTTTCTCTTGTTAGCTATATTCAGCCTGATGTGCGACAATATATTATCCAGACTTTTTATGCATTGTGTCAGTCGCCTTCAGCTTCATATATCAGGAACAAGCTAAGAGAGTGTCCATCGGTTCAAGTATTGGTCAAGTTGTTTGAGAATGAAAACCTAATTCTTCGAGCAAGTGCTGTGAAGCTGTTCTCTTGCCTGGTAGAAAGTTCTGATGAAGCCACCATACTGGAGCATGTGAATCAGAAGTGTATTGATACTTTACTCCAGATCCTGAAACCTCCATCTGATGAAGAGGAAGTTGTTTCTGCTATGGGAATAATATGCTATCTTCCAAAAATTCCACAAATCACTCAGTGGCTTTTGGATAGCGGGGCGCTGCCAACCATTTGTACCTATATCCAACAAGGGAAGGACAAAGATCTCCTAAAGAGTAAGCTGGTAGAGAATTCTGTTGGTGCCTTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGACTGCGGCTGAAACCGGGATTATAACTGTTTTAGTACAGTTGCTTGAAAGTGGATCTACTCCAACAAAACAGCTAGCGGCACAGTCGCTAACTCAATTTTCTAAAAGCTCAAACGAACTAAGCATTCCAGTGCCGAAGCGAAGGGGATTTTGGTGCTTCTCAGCTCAAGCAGAAGCAGTATGCTTAGTTCATGGTGGTATATGCACTGTGGAATCATCATTTTGCCTTTTGGAGGCTGATGCCGTGGGACCACTAGCAAAGACTCTTAGAGAATCTGATTCTGGAGTGTGTGAGACTTCTTTAGACGCTCTTCTAACTTTAATTGAAGGAGAAAAGCTACAGAACGGTAGTAAAGTGCTTGCAGATGAAGATGTCATACCATTGATAATAAGATTTCTCGGTTCCCCTTCCCCCGGATTGCAAGAAAAGTCTCTTAATGCTTTGGAAAGGATTTTCCGACTATTCGAGTTCAAACAGAAATATGGAGCTTCAGCTCAAATGCCTCTGGTTGACTTAACTCAGCGGGGTAATGGTAGCGTTAAATCCTTGGCAGCTCGAATATTAGCACATTTGAACGTGCTTCACGATCAATCTTCATATTTCTAA 2997 0.4094 MVLDSLISGPASEAISQIIDLVSEFVCSVDNVLVKKDSFKELADYLQRIEPILRQLRKEKVSDSETFNHAIEILNREIKDAKKLVQECCKKSKVYLLVNCRTVVKRLKHNTGEISRALGLLPLATSGLSAGIVEEIKKLCDNMQEAEFKAAVSEEEILEKIEAGIHEKNFDRSYANNLLHLIADAVGITKERSELKKELEEFKNEIENEKDRAEAIQMDQIIALLERSDAASSTREKELKYFAKRNSLGTQPLEPLHSFYCQITGDVMVDPVEISSGQTFERSAIEKWFAEGHKKCPLTSITLDTLVLRPNKTLKQSIEEWKDRNTMITIALLKDKIQSGDEAGVLSCLQTLQDLCEQKDQHREWVVLENYIPVLIQILAEKNRDKRNRVLRILCLLVKDNEDAKERIVNVDNAIEFIVHSLGRRLVEGKLAVELLLELSKYDFFREYIGKVQGCILLLVTMSSSEDNQAARDATELLEKLSYSDQNVIQMAKANYFKHLLQRLSTDDVKMVMVKMLAEMESTDHNKEVLFDNGILAPLLRLVSHNDVQMKLVALKALQNLSSLKKNGLEMIRQGAARLLFGILFQHSLHSSSLCEHVAPIIMQLAESTISQDTQTPVSLLESDEEVFNLFSLVSYIQPDVRQYIIQTFYALCQSPSASYIRNKLRECPSVQVLVKLFENENLILRASAVKLFSCLVESSDEATILEHVNQKCIDTLLQILKPPSDEEEVVSAMGIICYLPKIPQITQWLLDSGALPTICTYIQQGKDKDLLKSKLVENSVGALCRFTVPTNLEWQKTAAETGIITVLVQLLESGSTPTKQLAAQSLTQFSKSSNELSIPVPKRRGFWCFSAQAEAVCLVHGGICTVESSFCLLEADAVGPLAKTLRESDSGVCETSLDALLTLIEGEKLQNGSKVLADEDVIPLIIRFLGSPSPGLQEKSLNALERIFRLFEFKQKYGASAQMPLVDLTQRGNGSVKSLAARILAHLNVLHDQSSYF 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05303 998 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vivi6g05303 998 CDD RING-Ubox_PUB 259 308 IPR045210 -
Vivi6g05303 998 SMART arm_5 743 789 IPR000225 GO:0005515
Vivi6g05303 998 SMART arm_5 523 563 IPR000225 GO:0005515
Vivi6g05303 998 SMART arm_5 700 739 IPR000225 GO:0005515
Vivi6g05303 998 SMART arm_5 910 950 IPR000225 GO:0005515
Vivi6g05303 998 SMART arm_5 792 832 IPR000225 GO:0005515
Vivi6g05303 998 Coils Coil 185 219 - -
Vivi6g05303 998 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Vivi6g05303 998 SUPERFAMILY ARM repeat 638 988 IPR016024 -
Vivi6g05303 998 Coils Coil 136 156 - -
Vivi6g05303 998 Gene3D - 626 841 IPR011989 -
Vivi6g05303 998 Gene3D - 331 625 IPR011989 -
Vivi6g05303 998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 330 IPR013083 -
Vivi6g05303 998 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 998 - -
Vivi6g05303 998 Coils Coil 71 91 - -
Vivi6g05303 998 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vivi6g05303 998 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Vivi6g05303 998 SUPERFAMILY RING/U-box 246 327 - -
Vivi6g05303 998 CDD MLKL_NTD 9 126 - -
Vivi6g05303 998 SUPERFAMILY ARM repeat 330 653 IPR016024 -
Vivi6g05303 998 Gene3D - 11 126 IPR036537 GO:0007166
Vivi6g05303 998 Gene3D - 851 996 IPR011989 -
Vivi6g05303 998 Pfam Armadillo/beta-catenin-like repeat 523 563 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05303 Vivi-Chr6 157745094 157750281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05303 258 998 U-box Gene Family AT1G76390 27.284 4.93e-57 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05303 - - gmx:100799969 1375.53