Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05294 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCATCGAGGCCCCTGGACTTCTCGGGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAGATCACTTCCGAAAAGAGCTGGGCTTCTGAGATGCGGAAAAAGTTGCAGACTTCGATGGATGAACTATCTAAGACCGGATATAAAGAGAGGAAACATAACTCCTGAAGAAGATGATCTTATTGTAAGAATGCATTCGCTTCTTGGTAATAGATGGTCTCTTATTGCTGGAAGATTACCAGGAAGAACGGATAATGAGATAAAGAATTACTGGAACACGCATCTCGTTAAAAAACTAAATAATCAAGAACAACCTGAGGAGAAGAAGAAGAAGAAAAAGAAGCAAAAGAAGGGAAAGAACAAAACCATAACAAAAGTACCAGAAGATTCAGAGAAGAAGACCTTAGTTTATCTACCAAAGGCTATGAGGATCAAGAAGAGTTTATCATATGTAATACCAAGAACTGATAATACCTTAAACATGGAGCCAAACTCAGTAACAACAAGCCAAAAGGAAGAAGAGCAAAGAGTAGAAACAAAAGAGGGAGACAATGATGGGTTTGGATTGTTCTTTGGTGAACAGTGCCATGAAGATTTGGTCAACAACAATGACATGGAATGCCAAACTGGTTTTCTTGAGAAGTTGTATGAAGAGTACTTGCAGCTTTTGAAGAATGAAGAAAATCATGAAAAACTGTTGGATTCTTTTGCTGAGTCTTTATTGGTGTGA 780 0.3872 MGRAPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIVRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLVKKLNNQEQPEEKKKKKKKQKKGKNKTITKVPEDSEKKTLVYLPKAMRIKKSLSYVIPRTDNTLNMEPNSVTTSQKEEEQRVETKEGDNDGFGLFFGEQCHEDLVNNNDMECQTGFLEKLYEEYLQLLKNEENHEKLLDSFAESLLV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05294 259 MobiDBLite consensus disorder prediction 186 200 - -
Vivi6g05294 259 Gene3D - 14 66 - -
Vivi6g05294 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi6g05294 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi6g05294 259 CDD SANT 16 61 IPR001005 -
Vivi6g05294 259 FunFam Myb transcription factor 11 67 - -
Vivi6g05294 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi6g05294 259 Gene3D - 71 143 - -
Vivi6g05294 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi6g05294 259 CDD SANT 71 112 IPR001005 -
Vivi6g05294 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi6g05294 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi6g05294 259 SMART sant 66 114 IPR001005 -
Vivi6g05294 259 SMART sant 13 63 IPR001005 -
Vivi6g05294 259 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 211 - -
Vivi6g05294 259 MobiDBLite consensus disorder prediction 115 141 - -
Vivi6g05294 259 MobiDBLite consensus disorder prediction 176 200 - -
Vivi6g05294 259 Coils Coil 229 249 - -
Vivi6g05294 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05294 Vivi-Chr6 157716639 157718088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05294 1 203 MYB Transcription Factor Family AT4G09460 49.020 5.90e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g05294 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05294 K09422 - gmx:778044 298.901