Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05288 ATGGACGAAAATAAACCAACACCGTCCATCGAAGACGACGCAACCACCGCAGACAGCCGGAGAGTTGGTACGCGCCACCCAATCTACCGTGGCGTCCGGAAACGGCGATGGGGAAAATGGGTATCAGAAATTCGAGAACCGAAGAAGAAATCTCGTATATGGCTAGGCTCATTCCCGGTGCCGGAGATGGCCGCAAAAGCGTACGACGTCGCAGTATATTGCCTCAAAGGCCGAAAAGCGCAACTCAATTTTCCCAACGAGGTGGAAAATCTACCACTTCCGGCCACACCTACGGCCAGAGACATTCAAGCTGCGGCGGCCAAGGCGGCGAGTATGATGAAATCTTCAGTTGATGAGAAGGGTTGCATTGTGTCTGATGGAGATAGCGGTGGTGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTGATGGAAAGTGAGTGTAGCTGGAATTCTCCGAGTGGATCGTCGTGGAATTGCTCCGGTGACCTGACAGGGTGGCCGGAGGTTGAGGTTTTGGCGCAGCAACCGTTGATGTCGTGTTCTTTTAATAACTAA 558 0.5233 MDENKPTPSIEDDATTADSRRVGTRHPIYRGVRKRRWGKWVSEIREPKKKSRIWLGSFPVPEMAAKAYDVAVYCLKGRKAQLNFPNEVENLPLPATPTARDIQAAAAKAASMMKSSVDEKGCIVSDGDSGGDDFWGEIELPELMESECSWNSPSGSSWNCSGDLTGWPEVEVLAQQPLMSCSFNN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05288 185 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vivi6g05288 185 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Vivi6g05288 185 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vivi6g05288 185 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Vivi6g05288 185 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Vivi6g05288 185 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g05288 185 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vivi6g05288 185 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Vivi6g05288 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 120 - -
Vivi6g05288 185 MobiDBLite consensus disorder prediction 1 25 - -
Vivi6g05288 185 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Vivi6g05288 185 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05288 Vivi-Chr6 157640795 157641469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05288 24 181 AP2-EREBP Transcription Factor Family AT1G01250 61.392 1.71e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g05288 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05288 K09286 - gmx:100802036 243.432