Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05285 ATGGAAGCCGAAACTCAGCGAAAAGTTAAAGACATGGTATTGGATATACTCACAAAATCCAACATTGAAGAAACCACTGAGTTCATCGTCCGAGTTGCCGCTTCCGAGCGACTCGGTATCGACCTTTCCGACTCACACAGCAAACTATTCGTCAGAAACATCATCGAATCTTACCTTATCTCCATCGCCACCGGCGACAAACCACCCCAAGTATCCTCAGAGGTACCGCCACCGGAGGAACCGCCACAAGTTTCCACCGAGGCAGTGAATGTGATACACAATGAACCGCCACAAGAGTTGAATAAGATGGTGGGAGTGAAACGCAAAAACGACGACTCTGAAGACGTTATTTGTCAGCTATCAGCCAAGAGGAATGTGACTGTCCGAGATTTCAAAGGGACGACATTGGTGTCAATTAGGGAGTTCTACCTTAAAGATGGAAAACAGCATCCCACTGTTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAACAGTGTTCCTGCAATAGAAGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGAGCATAATGGCTGGAAAAATAGAGAAGTTTCAAGTTCAGTTGCTGATGTTCCTATTGAGACTGTCCCAATTGAGCCTGTCTCTATTAAACCTGTCTCTACTGAGCCTGTGTCTACCGAGCCTGTCTCTATTGAGCCTGTGCTCATTGAGATTGTCCCTATTGAGATTGTCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCCGAACAGGTAGAATTACTCTTGAAACAGTTAAAGATTAATTATGTGCTTACCGAGCCATGCCCAAATGCCATGTTAGGGGAAGACAATGCTAGTGCTGAAGAAATTTCTGAAACCAAAGCTGCTGAAAAGAGATGGGTAAATGATGATTTAATGTGTCGTCGCAACATATTGGGCCTTATATCTGATAGTTTATTCAAGAATTATGCAAGTAGAAAAATGAGTGCTAAGGAGTTATGGAAAGAGTTGAGACGTGTTTATCTGATTGAGGAATATGGAACCAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAAATGGATGATGAAAAAGCAGTTGCTGATCAAATTCAAGAACTTAATTGCATTGCAGACTCTATTCTTGCTGCTGGAATGCATATAGATGAGAACTTTCATGTCAGTGTCATCATTTCAAAGCTTCCACTATCATGGAAAGACTTTTACAACAAGTTAATGTGCGAGGAGCATCTACCTTTCTGGAAGTTAATGGAGCGCATAACAATAGAGGAAGAATCTCGCAATGGAGTCAAACAAGTTGGCGAACCTCCTTCTGATAATGCGAGATTGCACCATGCCAATAAAGGAGGAATCAAGGGGGCTGACATTAAGCCACCGCCCGGTTTTCCAAGGAAGTTTGAACCTAATGGCAAGAACAAAACCTGTTATGTATGTGGTCAAAAGGGGCATATTTCTAAAAACTGTTGGAGATGGCAGTAA 1497 0.4202 MEAETQRKVKDMVLDILTKSNIEETTEFIVRVAASERLGIDLSDSHSKLFVRNIIESYLISIATGDKPPQVSSEVPPPEEPPQVSTEAVNVIHNEPPQELNKMVGVKRKNDDSEDVICQLSAKRNVTVRDFKGTTLVSIREFYLKDGKQHPTVKGISLSSEQWSTFKNSVPAIEEAITKLEGRIRSEHNGWKNREVSSSVADVPIETVPIEPVSIKPVSTEPVSTEPVSIEPVLIEIVPIEIVRFDGKNYQVWAEQVELLLKQLKINYVLTEPCPNAMLGEDNASAEEISETKAAEKRWVNDDLMCRRNILGLISDSLFKNYASRKMSAKELWKELRRVYLIEEYGTKRSQVKKYIEFQMDDEKAVADQIQELNCIADSILAAGMHIDENFHVSVIISKLPLSWKDFYNKLMCEEHLPFWKLMERITIEEESRNGVKQVGEPPSDNARLHHANKGGIKGADIKPPPGFPRKFEPNGKNKTCYVCGQKGHISKNCWRWQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05285 498 Gene3D Transcriptional Coactivator Pc4; Chain A 107 185 IPR009044 GO:0003677|GO:0006355
Vivi6g05285 498 SUPERFAMILY ssDNA-binding transcriptional regulator domain 117 179 IPR009044 GO:0003677|GO:0006355
Vivi6g05285 498 ProSiteProfiles Zinc finger CCHC-type profile. 481 494 IPR001878 GO:0003676|GO:0008270
Vivi6g05285 498 Pfam DEK C terminal domain 5 59 IPR014876 -
Vivi6g05285 498 SMART c2hcfinal6 480 496 IPR001878 GO:0003676|GO:0008270
Vivi6g05285 498 Gene3D - 452 497 - -
Vivi6g05285 498 SUPERFAMILY Retrovirus zinc finger-like domains 468 494 IPR036875 GO:0003676|GO:0008270
Vivi6g05285 498 Pfam Transcriptional Coactivator p15 (PC4) 118 168 IPR003173 GO:0003677|GO:0006355
Vivi6g05285 498 Pfam gag-polypeptide of LTR copia-type 299 434 - -
Vivi6g05285 498 FunFam RNA polymerase II transcriptional coactivator KELP 108 181 - -
Vivi6g05285 498 Pfam Zinc knuckle 479 494 IPR001878 GO:0003676|GO:0008270
Vivi6g05285 498 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 183 IPR045125 GO:0003713|GO:0060261
Vivi6g05285 498 MobiDBLite consensus disorder prediction 433 473 - -
Vivi6g05285 498 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05285 Vivi-Chr6 157583215 157586647 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vivi6g05285 Retrotran_gag_2 1.2e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05285 - - vvo:131612934 955.666