Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05284 ATGGAAGCCGAAACTCAGCGAAAAGTTAAAGACATGGTATTGGATATACTCACAAAATCCAACATTGAAGAAACCACTGAGTTCATCGTCCGAGTTGCCGCTTCCGAGCGACTCGGTATCGACCTTTCCGACTCACACAGCAAACTATTCGTCAGAAACATCATCGAATCTTACCTTATCTCCATCGCCACCGGCGACAAACCACCCCAAGTATCCTCAGAGGTACCGCCACCGGAGGAACCGCCACAAGTTTCCACCGAGGCAGTGAATGTGATACACAATGAACCGCCACAAGAGTTGAATAAGATGGTGGGAGTGAAACGCAAAAACGACGACTCTGAAGACGTTATTTGTCAGCTATCAGCCAAGAGGAATGTGACTGTCCGAGATTTCAAAGGGACGACATTGGTGTCAATTAGGGAGTTCTACCTTAAAGATGGAAAACAGCATCCCACTGTTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAACAGTGTTCCTGCAATAGAAGAAGCTATCACAAAGTTGGAAGGAAGGATAAGTCAAAACAATGCCAGATCAGAGCATAATGGCTGGAAAAATAGAGAAGTTTCAAGTTCAGTTGCTGATGTTCCTATTGAGACTGTCCCAATTGAGCCTGTCTCTATTAAACCTGTCTCTACTGAGCCTGTGTCTACCGAGCCTGTCTCTATTGAGCCTGTGCTCATTGAGATTGTCCCTATTGAGATTGTCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCCGAACAGGTAGAATTACTCTTGAAACAGTTAAAGATTAATTATGTGCTTACCGAGCCATGCCCAAATGCCATGTTAGGGGAAGACAATGCTAGTGCTGAAGAAATTTCTGAAACCAAAGCTGCTGAAAAGAGATGGGTAAATGATGATTTAATGTGTCGTCGCAACATATTGGGCCTTATATCTGATAGTTTATTCAAGAATTATGCAAGTAGAAAAATGAGTGCTAAGGAGTTATGGAAAGAGTTGAGACGTGTTTATCTGATTGAGGAATATGGAACCAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAAATGGATGATGAAAAAGCAGTTGCTGATCAAATTCAAGAACTTAATTGCATTGCAGACTCTATTCTTGCTGCTGGAATGCATATAGATGAGAACTTTCATGTCAGTGTCATCATTTCAAAGCTTCCACTATCATGGAAAGACTTTTACAACAAGTTAATGTGCGAGGAGCATCTACCTTTCTGGAAGTTAATGGAGCGCATAACAATAGAGGAAGAATCTCGCAATGGAGTCAAACAAGTTGGCGAACCTCCTTCTGATAATGCGAGATTGCACCATGCCAATAAAGGAGGAATCAAGGGGGCTGACATTAAGCCACCGCCCGGTTTTCCAAGGAAGTTTGAACCTAATGGCAAGAACAAAACCTGTTATGTATGTGGTCAAAAGGGGCATATTTCTAAAAACTGTTGGAGATGGCAGTAA 1512 0.42 MEAETQRKVKDMVLDILTKSNIEETTEFIVRVAASERLGIDLSDSHSKLFVRNIIESYLISIATGDKPPQVSSEVPPPEEPPQVSTEAVNVIHNEPPQELNKMVGVKRKNDDSEDVICQLSAKRNVTVRDFKGTTLVSIREFYLKDGKQHPTVKGISLSSEQWSTFKNSVPAIEEAITKLEGRISQNNARSEHNGWKNREVSSSVADVPIETVPIEPVSIKPVSTEPVSTEPVSIEPVLIEIVPIEIVRFDGKNYQVWAEQVELLLKQLKINYVLTEPCPNAMLGEDNASAEEISETKAAEKRWVNDDLMCRRNILGLISDSLFKNYASRKMSAKELWKELRRVYLIEEYGTKRSQVKKYIEFQMDDEKAVADQIQELNCIADSILAAGMHIDENFHVSVIISKLPLSWKDFYNKLMCEEHLPFWKLMERITIEEESRNGVKQVGEPPSDNARLHHANKGGIKGADIKPPPGFPRKFEPNGKNKTCYVCGQKGHISKNCWRWQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05284 503 MobiDBLite consensus disorder prediction 438 478 - -
Vivi6g05284 503 Pfam Transcriptional Coactivator p15 (PC4) 118 168 IPR003173 GO:0003677|GO:0006355
Vivi6g05284 503 SUPERFAMILY ssDNA-binding transcriptional regulator domain 117 179 IPR009044 GO:0003677|GO:0006355
Vivi6g05284 503 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 183 IPR045125 GO:0003713|GO:0060261
Vivi6g05284 503 SUPERFAMILY Retrovirus zinc finger-like domains 473 499 IPR036875 GO:0003676|GO:0008270
Vivi6g05284 503 Gene3D Transcriptional Coactivator Pc4; Chain A 107 185 IPR009044 GO:0003677|GO:0006355
Vivi6g05284 503 SMART c2hcfinal6 485 501 IPR001878 GO:0003676|GO:0008270
Vivi6g05284 503 Pfam DEK C terminal domain 5 59 IPR014876 -
Vivi6g05284 503 FunFam RNA polymerase II transcriptional coactivator KELP 108 181 - -
Vivi6g05284 503 Pfam Zinc knuckle 484 499 IPR001878 GO:0003676|GO:0008270
Vivi6g05284 503 ProSiteProfiles Zinc finger CCHC-type profile. 486 499 IPR001878 GO:0003676|GO:0008270
Vivi6g05284 503 Pfam gag-polypeptide of LTR copia-type 304 439 - -
Vivi6g05284 503 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Vivi6g05284 503 Gene3D - 457 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05284 Vivi-Chr6 157583211 157586648 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vivi6g05284 Retrotran_gag_2 1.2e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05284 - - vvo:131612934 971.459