Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05283 ATGACTTCAACAAACAGCATGTCATCATTATCATGGGATGAACAAGATAAATCCATGCTTCAAACCGTTCTTGGTCCTCCAGCTTTTCATTTCTTGATATCAAATTGTTTATCCAACGAAACTGTCTTAATCGCTGTTGGTGGTACTGGTAGTGGTAGTTGCAGTGCTGATTCTCTTCAAAACAAACTCTCTGAACTTGTTGAAAACTCATCAACCTTCAATTGGAACTACGCTATTTTCTGGCAACTTTCTCAATCGAAAACCGGCGATTACGTTCTTGGTTGGGGCGATGGATGTTGCAGAGAACCAAACGAAGAAGAACAACAAGAGAATGAAGTTTTAACCCTTGGAAGAAATGAAGAACAAGAGAGGGTTGAGCAGAATATGAGGAAGAGGGTTTTACAGAAGCTACACAAAGCTTTTGGTGGTTCTGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTTTTTTTAGCTTCTATGTACTTTTCTTTTCCTAAAGGGTATGGTGGACCCGGTAAGTGTTTTGATTCTGGTCAAAATTTGTGGTTCAAATCTCTTTCTGATGATTACTGTGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTACTGCCTACTGATTTTGGTGTTCTTGAGTTGGGTTCTGTTAGAATCTTGCCTCAAAGCTTTGAGTTGTTGAACAATGTTAAGTCATTGTTTACAATTTCAAATTCTGTTTCAACCACACAACCGTCGTCATCAACGTTGTTGTTGTATCCTAGTCCTAGTGTGATCAATGAGGGAAGAGATGATGAAAGTGGAGTTTCAAATGGTGTTGTTCATGTTCCAGTTCCACCAAAGGTTGCTTTGAATTTGAGCAATGGTCGTTCACATTTTAGAGAGAAACTTGCTATTAGGAAAATGGATAGTACTAATAACATTAACTTTCCTAGTTCTAGAAATGGTGTTTCTGGTTCTGCTAGTTGGGGAAAGAATCAAGGTCCAGGTGAAGTTTTTGGTTCTAGTAATGGTGTGAGGAAGGGTTTTAGCAACTATCAACCACAAAGGAGACAGGTTCTACCACAAAGACAGGTTCAAATGCAAATTGATTTTTCGGGAGCGAAGTCGAGGGCTAATTCTGTGAGACCGGTTATTGGTGAATCGGAAGTTGCTGCGGCTGATGTTGAGGCGGATCAGGCTAATGATGGAAAGAGGCCGAGGAAGCGCGGAAGGAAGCCTTCAAGTGGAAGGGATGAGCCTCTCAATCATGTGGAGGCAGAGAGACAAAGACGTGAGAAGCTTAATCAGCGTTTTTACGCTTTAAGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCGTCTTTACTTGGTGATGCCATTGCTTACATCAACGAGCTTCAAGCGAAACTCAAGATCATGGAGTCTGAGAAAGAGACACTCGGAAGCAGTACTCCGAGGGATGGATCAGCCAACTCAAGATCAGAAAAACACCATCAAGTTCCTCCTCACGACGTTGATATTCAAACTTCTCAGGACGAAGTAATCGTGAAGGTGAGTTGTCCTATTGATACTCACCCCATTTCGAAAGTAATTGAAACATTCAAAGATGCACAAATCGGTGTAGTTGAGTCGAAGCTCGTTGCGGCAAACGATACAATCTACCATACATTTGTAATTAAGTCAGAAGAACCCGAACAACTCACCAAGGACAAGTTGATTGCAGCATTTTCCGGCGAATCCATCTCGTTACAAACACAAACTTTGTCCATATAG 1788 0.4133 MTSTNSMSSLSWDEQDKSMLQTVLGPPAFHFLISNCLSNETVLIAVGGTGSGSCSADSLQNKLSELVENSSTFNWNYAIFWQLSQSKTGDYVLGWGDGCCREPNEEEQQENEVLTLGRNEEQERVEQNMRKRVLQKLHKAFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFDSGQNLWFKSLSDDYCVRSFLAKSAGIQTVVLLPTDFGVLELGSVRILPQSFELLNNVKSLFTISNSVSTTQPSSSTLLLYPSPSVINEGRDDESGVSNGVVHVPVPPKVALNLSNGRSHFREKLAIRKMDSTNNINFPSSRNGVSGSASWGKNQGPGEVFGSSNGVRKGFSNYQPQRRQVLPQRQVQMQIDFSGAKSRANSVRPVIGESEVAAADVEADQANDGKRPRKRGRKPSSGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESEKETLGSSTPRDGSANSRSEKHHQVPPHDVDIQTSQDEVIVKVSCPIDTHPISKVIETFKDAQIGVVESKLVAANDTIYHTFVIKSEEPEQLTKDKLIAAFSGESISLQTQTLSI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05283 595 PANTHER MYC 49 580 IPR045084 GO:0003700|GO:0006355
Vivi6g05283 595 MobiDBLite consensus disorder prediction 320 364 - -
Vivi6g05283 595 CDD bHLH_AtAIB_like 420 486 - -
Vivi6g05283 595 Coils Coil 104 124 - -
Vivi6g05283 595 Gene3D - 416 487 IPR036638 GO:0046983
Vivi6g05283 595 FunFam Transcription factor bHLH13 415 489 - -
Vivi6g05283 595 SMART finulus 428 477 IPR011598 GO:0046983
Vivi6g05283 595 MobiDBLite consensus disorder prediction 416 434 - -
Vivi6g05283 595 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 422 471 IPR011598 GO:0046983
Vivi6g05283 595 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 59 244 IPR025610 -
Vivi6g05283 595 MobiDBLite consensus disorder prediction 396 434 - -
Vivi6g05283 595 MobiDBLite consensus disorder prediction 482 508 - -
Vivi6g05283 595 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 420 486 IPR036638 GO:0046983
Vivi6g05283 595 Coils Coil 468 488 - -
Vivi6g05283 595 Pfam Helix-loop-helix DNA-binding domain 426 472 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05283 Vivi-Chr6 157569632 157571982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05283 10 594 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.742 1.73e-171 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g05283 bHLH-MYC_N 8.9e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05283 - - vvo:131610753 1112.06