Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05277 ATGGACGCTGAAACTTCACGTAAACCTTTGATTCCATCAACAATGAACGCTAAAACTCGACGTAAAATTGAGGAAATGGTGATGGATTTACTCACAAAAGCCGAACTTGAAAAAGCCACTGAGTTCACCATCCGACTCGCCGCTTCCGAACGACTCGGTATCGACCTTTCCGACTCACACAGCAGAAAATTCGTCAGAAACATCGTCGACTCTTACCTTATCTCCATCGCCAAAAACAAGAAACTACCGCAAGTTTCCACCGAAGCAGTCAATGAACCGCCGGTGGCGGGAGTGACACGCAAGAACGACGACTCTGAACTCGTTATTTGTGAGCTATCATCCAAGAGGAAGGTGACTGTGGGAGATTACGAAGGGAGGACCATGGTGTCAATTAGGGAGTACTATGTCAAAGATGGAAAACAGCTTCCCACTACTAAAGGGATGAGTTTATCTTCTCAACAATGGTCAACCTTCAAGAATAGTGTTCCTGCCATAGAGGAAGCTATCACAGAGCTGGAAGGAAGGTTAAGGAGAAGATCAGGGCATAGTGGCTGGAAAAATGTTCCTGTTCAGCCTGTCCCTATTGAGCCTGCCTCTATTGAGCCTGTGCCCATTGAGATTGTCCCTATCGAGATCGTCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGGTAGAATTACTCTTGAAACAGTTGAAGATTGATTATGTGCTCACTGAACCATGCCCAAATGCTACATTAGGGGAAAATGATGCTAGTGCTGGAGAAATATCTAAAGCCAAAGGGATGGGTAAACGATGA 807 0.4535 MDAETSRKPLIPSTMNAKTRRKIEEMVMDLLTKAELEKATEFTIRLAASERLGIDLSDSHSRKFVRNIVDSYLISIAKNKKLPQVSTEAVNEPPVAGVTRKNDDSELVICELSSKRKVTVGDYEGRTMVSIREYYVKDGKQLPTTKGMSLSSQQWSTFKNSVPAIEEAITELEGRLRRRSGHSGWKNVPVQPVPIEPASIEPVPIEIVPIEIVRFDGKNYQVWAEQVELLLKQLKIDYVLTEPCPNATLGENDASAGEISKAKGMGKR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05277 268 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 17 174 IPR045125 GO:0003713|GO:0060261
Vivi6g05277 268 FunFam RNA polymerase II transcriptional coactivator KELP 100 173 - -
Vivi6g05277 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 109 171 IPR009044 GO:0003677|GO:0006355
Vivi6g05277 268 Pfam DEK C terminal domain 19 73 IPR014876 -
Vivi6g05277 268 Pfam Transcriptional Coactivator p15 (PC4) 110 160 IPR003173 GO:0003677|GO:0006355
Vivi6g05277 268 Gene3D Transcriptional Coactivator Pc4; Chain A 99 175 IPR009044 GO:0003677|GO:0006355
Vivi6g05277 268 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 17 74 IPR014876 -
Vivi6g05277 268 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05277 Vivi-Chr6 157457543 157458812 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vivi6g05277 DEK_C 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05277 - - vvo:131615109 493.426