Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05276 ATGGACTCTTTTCCCGGTGACCGACCGGGCAACCGAGGCGGTGTCGCCGGAGAGAAACAAATCCAGAACGGAATCCAAGAGGCGAAACAACTCAGATGTTATAGCAGGAGGAGGAAGATCGCCGATCTGAACAACGGATCGGAGTCGGTGCTCAATGGAAACTCCACGATAAAGAAGAAGAAACCGATCGATCAAGAGAATGAAGGTGATTATGGGAAAAAACTAATTGATGTGTATAAGGTCAATAAACCCATCAATGGAGTTAAAGATAAAGATACCAAACAACGGGGTTTATCCACCAAAACCAAGGAGGGTGGAAGTTTGATGTGCCATCAGTGCCAACGGAATGATAAGACTGGCGTTGTCTTTTGCTCTACTTGCAACAGGAAACGCTATTGTTTTGAATGCATTAAGAACTGGTATCCAGGAAAAACCCATGAGGAATTTGAGAATGCGTGTCCATTTTGTTGGGGCAATTGCAACTGCAAAGCTTGCTTGCGGGAGTTTCCTGCGCAAATGGACCGAAAAGTAGATGCCAGTGTCAAATTACAGCGACTGCTGTACTTACTCTCTAAAGCCCTGCCCGTTCTGAGGCATGTCCACAAGGAGCAGAGCTTGGAACTAGAGACTGAAACCAAAATAAGGGGTAAGCAACTGCAAGAAATTGACATAACAAGATCAAAGCTAAGTGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATACATGGATTTTACCGTAGCTGCCCCAACACCAGTTGCTCTTATGATCTCTGTCTCATGTGTTGTCAAGAGCTCAGAGAGGGTAACCAACCCGGAGGCATGGAGGCTGGAACATCTCATGAAAATTTTGAAAAGACTTTTAACAATCATGGTTCAACAAAAAATCAGAGTAAAACACATCGTAGAAGATATGACTGGGAAAGCGAACTTGCACCTACTAGGTTACCTTCTCAGTCTGACATGCTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTAGTTCTGCTTTGCTTGAACTGAGACGCATTTACAAAGCTAATTGGGTGGCAAAGCTGCTAAATAATGCTGAAGATCTCACTAGAAATTATGCGCCTCTGGATGTAGATATTACTGAAAAGTGTTCTTTATGCCAGCTAAATTTGTTAGAAGGAAAAATCAATCCTGAAGTCAGGAGAGCAGCATTCCGGGATGACAATAAAGATAACTTCTTATATAGTCCAAATGCCCTTGACATTTCTGATGATGAGATTGAGCACTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTCTGGCCAAAACATCTGGTCTTAGTTGGGAACCAATGGTAATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGTGAAGTTCAAAGAGGAAACACAAAGTGTCAAGGCTGTTGATTGCTTGGATTGGTGCGGGGTTGAAATAAATATACACCAGTTTTTCCAAGGCTACCTAAAGGGTCGAATGCATAAAAATAAGTGGCCTGAAATGTTGAAATTAAAAGATTGGCCTTCATCGACCTCTTTTGAAGAGCGCTTGCCGAGGCATGGTGCTGAATTCCTTGCTGCACTACCGTATATGGAATACACTGATCCAAAATCGGGTCTTTTAAATTTTGCCAGTAAACTTCCTGATGGCTCATTGAAACCAGATTTGGGACCCAAAACGTACATTGCTTATGGATTTTCTGAAGAGCTTGGCAGAGGAGATTCTGTTACAAAACTGCACTGCGATGTGTCTGACGCGGTGAATGTGCTGACACACACAAACAAGGTGAATATAGAGGACTGGCAGAGAGAAAGCATAAATAAATTGAAGAAGACATACGATAAAGAAGACAGTTTAGAACTTTATCATGAAGCTGAGGCTGGTAATCCCAAGATAGAGTCAAAACAAGGCAATGGGAGAGATTCCTTGGACATTGATAGTGAAACTGAGACTGTCCTTGGTGGCGCTGTTTGGGATATCTTCCGCCGGGAAGATGTTCCAAAGTTGATTGAGTACGTAAAAAAGCACGAGAAGGAATTTCGCCATATCAACAATGAACTCGTTGATTCGGTTATACATCCCATTCATGATCAGACTATATTCTTAAATGCGAGGCATAAGAAACAGCTAAAAAAAGAATTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGCGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAGTCTTGTATGAAGGTTGCACTCGACTTTGTTTCGCCGGAAAATGTCGAAGAATGTTTACGACTAACAGAAGAGTTTCGTTTACTCCCAAAGTACCACAGAGCGAAGGAAGACAAATTGGAGGTTAAAAAGATGAGCCTTTATGCTGTAAGTAATGCTGTTAGACAAGTTAAAGAACTGATGGTGGCAAATAAGTAA 2481 0.4268 MDSFPGDRPGNRGGVAGEKQIQNGIQEAKQLRCYSRRRKIADLNNGSESVLNGNSTIKKKKPIDQENEGDYGKKLIDVYKVNKPINGVKDKDTKQRGLSTKTKEGGSLMCHQCQRNDKTGVVFCSTCNRKRYCFECIKNWYPGKTHEEFENACPFCWGNCNCKACLREFPAQMDRKVDASVKLQRLLYLLSKALPVLRHVHKEQSLELETETKIRGKQLQEIDITRSKLSESERLYCDNCSTSIHGFYRSCPNTSCSYDLCLMCCQELREGNQPGGMEAGTSHENFEKTFNNHGSTKNQSKTHRRRYDWESELAPTRLPSQSDMLSPFPEWKANSDGNIPCPPKQRGGCSSALLELRRIYKANWVAKLLNNAEDLTRNYAPLDVDITEKCSLCQLNLLEGKINPEVRRAAFRDDNKDNFLYSPNALDISDDEIEHFQRHWMRGEPVVVRNVLAKTSGLSWEPMVMWRALRETGSKVKFKEETQSVKAVDCLDWCGVEINIHQFFQGYLKGRMHKNKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMEYTDPKSGLLNFASKLPDGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIEDWQRESINKLKKTYDKEDSLELYHEAEAGNPKIESKQGNGRDSLDIDSETETVLGGAVWDIFRREDVPKLIEYVKKHEKEFRHINNELVDSVIHPIHDQTIFLNARHKKQLKKEFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVEECLRLTEEFRLLPKYHRAKEDKLEVKKMSLYAVSNAVRQVKELMVANK 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05276 826 SMART cupin_9 536 788 IPR003347 -
Vivi6g05276 826 CDD cupin_RmlC-like 712 760 - -
Vivi6g05276 826 MobiDBLite consensus disorder prediction 644 664 - -
Vivi6g05276 826 FunFam Transcription factor jumonji domain-containing protein 417 797 - -
Vivi6g05276 826 MobiDBLite consensus disorder prediction 1 22 - -
Vivi6g05276 826 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 70 823 IPR045109 GO:0032454|GO:0033169
Vivi6g05276 826 Pfam JmjC domain, hydroxylase 673 771 IPR003347 -
Vivi6g05276 826 ProSiteProfiles Zinc finger RING-type profile. 110 156 IPR001841 -
Vivi6g05276 826 MobiDBLite consensus disorder prediction 44 65 - -
Vivi6g05276 826 Gene3D Cupin 423 797 - -
Vivi6g05276 826 ProSiteProfiles JmjC domain profile. 555 788 IPR003347 -
Vivi6g05276 826 SUPERFAMILY Clavaminate synthase-like 433 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05276 Vivi-Chr6 157434164 157446257 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi6g05276 JmjC 4.7e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05276 K15601 - mnt:21406261 993.03