Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05259 ATGACCATCAAGCGTGATTTGAAATCTGAAGCTCAACACTCTGCATCTCCATCCATTCAGAAGAAGCCCAAAGCCAACAATTGCGCTTCTGTCTGTGGATCCACTGCTGCTGCTGCTGCTGCTGCTGGCGAGGTTCATTCTAGTTCCGATCTCAATTTCAATGCCAATGCGAATTCGAATTCAGCTTCGACTGGAGAAGCTCCTCTGTTTCCGCGATCATCAAGAGGTCGCGTTCAGAAGCCTCCATCGAAGTTCAATGATTCCGTACTGTTCGATTCACGGAAGAAGAATAATAATGGAGGAATCAGAAAATCTGGATCAGGTATTGAAGTTGGCAACAGTTCGGGAGAGATTGGAAAAAAAGGGAAGGAAATCAAATGTGATTTGAAAACAGAGAGTGATAATGGATTTGATGAATTTGGCTGTGACAAGAATGCTGAGTCGTTTAAGAGCATTAAAACGACGGTTAGTGGGAGTGAATTGATGTTGGTTAAAACAGAGAGTGAAAATGGTTTTGATGAAAAGGGGAAAAAGGAGGAAGAGGTTTTCGAGCTGGAGGAATTTGGTTTGGGTGATGTGGTTTGGGCAAAATGTGGTAAGAGTAATATTGCGTGGCCTGCTGTGGTGATTGATCCCATCTCACAAGCTCCTGAGTCTGTTCTCAGACGATGTGTTCCTGGTGCAATTTGTGTTATGTTTTTTGGTTATTCGAACGCAAAGCTAAGGGACTATGCGTGGGTGAAGCAGGGGATGGTATTTCCCTTCTTGGAATTCATGGATAGATTTCAGGGGCAGACCCGAATATATAAGAGCCAACGCAGCGACTTTCACAAGGCAGTGGAGGAAGCGATTTTGGCAAACAATGACATTCTCGACCCACATTTCCGAGCTCAGCAAAATGTGGAGGGCGAGGGTTCCTGTGCTGGTCAGGAATACCACTACCAAGACCAGGATACAATATTTTGTTATGGCTGTGGTTTGACGTTGCCTTGCAAAACCATGAAGGAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAACCTTGTGCAAAGTTACTTAAATCGAAACAATACTGTGGCATTTGCAAAAAGGTTTGGCACCATTTAGACGCTGGTGATTGGGTACGCTGCGACGGATGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAATATAGAATACCATTGCCCAGACTGCAAGGGAAAGATGAAACGTAATTTATCAGAAGCACAAACAAATGAATCAAAAATAAAGGACAGATCAGTAGAGAAAAACCAAAAACCTGTGCTACCTGAAACGCTAGCAGTGGTGTGCAATCACATGAAAGGAATTTACTTTCCAAGGCTTCATCAAGTTATGTGCGAGTGTGGCTCGTGTGGGTCAAAGAAGCATGCATTGCCTGAATGGGAACGACATGTGGGTTGCAGAGCCAAAAAATGGAGACTTAGTGTGAAAGTAGAAGGCACAATGCAACCGCTAATAAAATGGATCACGGAATTCAATTCCCAAGCTGGAATTCCCTCGCAGTTAGATCAGAAACAGGTGCTTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTGTGCAAAATGGACAACAGAGAGATGTGCGGTATGCAAATGGTTTGAAGATGAAGACGTTAACAATATTATCATCTGTAACAGGTGCCAAATTGCAGTCCACCAAGAGTGCTATGGGGCAAGGCAGGTCCAAGATTTTAACTCATGGGTTTGCAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGTCTCTGTCCAGTTAAAGGTGGTGCACTAAAGCCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTTCTTTCGAAGACGAAAAAGCAATGGAACCTGCTTCTGGAATCCTTAAAATTCCTCCTAATTCCTTTTTGAAGACTTGCGTGATTTGTAAACAAAGCCATGGTTCCTGTACACGTTGTTGCAAGTGTGAGACATATTTTCATGCGATGTGTGCATTAAGAATGGGATATAGCATGACAGTGCGTACTACAGTGAAGAAGGGAACTCAAGTAACAAAGAACTTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGGAGTGTTTGTGTATCCACCCCTAAGGACAATCTCTCCAAGAACTTCGTTTCAAAAATGCAATAGAGAATCAAAGCTTATTTCATCAAATAGTATAGAACTCCTTGAACCTCCATCTTCTGAAAGTAATGAGGTTGAGTTACTATCTGCTGCCAGGTGTCGTGTTTACAGAAAGTTTCCTAATAAGGACTGTGCACCAATAATTCACTTGCTTGGGGGGCCAAACATTCATTCTTTAAGTGCAATAACTCAGTTAAACAGCAGCACGGATGCTGCTGAAACATTTTCTTCATTTAAGGAACGCCTTCACCACTTACAGAAAATGGAAAATTATAAAGTTTGCCTTGGAAAATCAGCTATCCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGAGATGGTTGTTGAGTATCGTGGTGAGCAAATAAGGGGTAGTCTTGAGGATTCGAGGGAAGCAAGACACCGGTTAGAAGGCAAAGATTGTTATGTGAGTCTCGTTAAAATTGTTTGA 2676 0.4275 MTIKRDLKSEAQHSASPSIQKKPKANNCASVCGSTAAAAAAAGEVHSSSDLNFNANANSNSASTGEAPLFPRSSRGRVQKPPSKFNDSVLFDSRKKNNNGGIRKSGSGIEVGNSSGEIGKKGKEIKCDLKTESDNGFDEFGCDKNAESFKSIKTTVSGSELMLVKTESENGFDEKGKKEEEVFELEEFGLGDVVWAKCGKSNIAWPAVVIDPISQAPESVLRRCVPGAICVMFFGYSNAKLRDYAWVKQGMVFPFLEFMDRFQGQTRIYKSQRSDFHKAVEEAILANNDILDPHFRAQQNVEGEGSCAGQEYHYQDQDTIFCYGCGLTLPCKTMKEIKDSSCAPQHYCKPCAKLLKSKQYCGICKKVWHHLDAGDWVRCDGCNVWVHAECDKISSKLFKDLENIEYHCPDCKGKMKRNLSEAQTNESKIKDRSVEKNQKPVLPETLAVVCNHMKGIYFPRLHQVMCECGSCGSKKHALPEWERHVGCRAKKWRLSVKVEGTMQPLIKWITEFNSQAGIPSQLDQKQVLSFLQEKYEPVCAKWTTERCAVCKWFEDEDVNNIIICNRCQIAVHQECYGARQVQDFNSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVSFEDEKAMEPASGILKIPPNSFLKTCVICKQSHGSCTRCCKCETYFHAMCALRMGYSMTVRTTVKKGTQVTKNLIYCAVHRVPNPDSGVFVYPPLRTISPRTSFQKCNRESKLISSNSIELLEPPSSESNEVELLSAARCRVYRKFPNKDCAPIIHLLGGPNIHSLSAITQLNSSTDAAETFSSFKERLHHLQKMENYKVCLGKSAIQGWGLFARRDLQEGEMVVEYRGEQIRGSLEDSREARHRLEGKDCYVSLVKIV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05259 891 CDD PWWP_AtATX3-like 191 286 - -
Vivi6g05259 891 SUPERFAMILY FYVE/PHD zinc finger 357 417 IPR011011 -
Vivi6g05259 891 ProSitePatterns Zinc finger PHD-type signature. 547 592 IPR019786 -
Vivi6g05259 891 PANTHER PHD FINGER PROTEINS 59 390 - -
Vivi6g05259 891 Pfam PHD-finger 360 413 IPR019787 -
Vivi6g05259 891 Pfam PHD-zinc-finger like domain 600 712 - -
Vivi6g05259 891 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 885 IPR025780 -
Vivi6g05259 891 SUPERFAMILY Tudor/PWWP/MBT 182 290 - -
Vivi6g05259 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 414 IPR013083 -
Vivi6g05259 891 ProSiteProfiles Extended PHD (ePHD) domain profile. 598 713 IPR034732 -
Vivi6g05259 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 714 IPR013083 -
Vivi6g05259 891 MobiDBLite consensus disorder prediction 50 115 - -
Vivi6g05259 891 CDD PHD_ATX3_4_5_like 546 592 IPR042011 -
Vivi6g05259 891 FunFam Histone-lysine N-methyltransferase 596 715 - -
Vivi6g05259 891 ProSiteProfiles Zinc finger PHD-type profile. 358 414 IPR019787 -
Vivi6g05259 891 SUPERFAMILY FYVE/PHD zinc finger 545 609 IPR011011 -
Vivi6g05259 891 SUPERFAMILY SET domain 820 878 IPR046341 -
Vivi6g05259 891 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g05259 891 Pfam PWWP domain 191 285 IPR000313 -
Vivi6g05259 891 SMART PHD_3 657 713 IPR001965 -
Vivi6g05259 891 SMART PHD_3 546 593 IPR001965 -
Vivi6g05259 891 SMART PHD_3 360 412 IPR001965 -
Vivi6g05259 891 MobiDBLite consensus disorder prediction 92 112 - -
Vivi6g05259 891 ProSiteProfiles Zinc finger PHD-type profile. 544 595 IPR019787 -
Vivi6g05259 891 Pfam PHD-finger 559 593 - -
Vivi6g05259 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 541 595 IPR013083 -
Vivi6g05259 891 MobiDBLite consensus disorder prediction 12 27 - -
Vivi6g05259 891 MobiDBLite consensus disorder prediction 50 68 - -
Vivi6g05259 891 CDD PHD_TCF19_like 361 411 - -
Vivi6g05259 891 Gene3D - 184 290 - -
Vivi6g05259 891 ProSiteProfiles PWWP domain profile. 190 258 IPR000313 -
Vivi6g05259 891 SMART PWWP_4 188 256 IPR000313 -
Vivi6g05259 891 Gene3D SET domain 793 890 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05259 Vivi-Chr6 157291148 157297974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05259 547 703 C2H2 Transcription Factor Family AT3G14740 34.940 3.97e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi6g05259 zf-HC5HC2H_2 5.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05259 - - lja:Lj1g3v5034780.1 1073.54