Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05257 ATGAACTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACTTTAGAAAATTCATGTCAAAATTCTTGGTGCAGTGAGAATAACATCCTTATTCGTTTTCCTTTTCGATTAGAAGTTGAAGGTGATCAATATTCTTATTGTGGTTATCCTGGTTTCGAATTAAGTTGTACTAATGATAGCAGAATAATTCTAACACTTCCTTATTCAGGAGTGTTCTATGTTCGTGAAATTGATTATCTTCGACAATACATACAAGTCTATGACCCTCAGCGTTGTCTTCCAAATCGTCTTCTAAGCCTTAATCTTTCAGGTTCACCTTTCGTTACCGGATTTCTCACGAATTACACCCTCTTGAGCTGCTCAACTCCAAACATTGGATCACAATTCATACCTGTTGACTGTCTTAGCAGTTCTACACATTTTGTATCAGTTATTCCTTCATTGAGCTTCACCGGTTCATTGCCTCAGTCTTGCTATGTTATTAGAAATCTCTCAGTTCCAGTTGATAGTTCATATCAAGATTTTTTCTTAAACAACCAGCTTAGTGAAGATTTTGAACTAACATGGTCTTCACCAAATTGTAGATATTGCGAATTACAAGATGACATGTGCGGACTCGAGAGCAGAAATAGTGATCAAGTTCGCTGTTTCTCTAACAATACAAATCAACAAACGGGTCATTCACAAAACAACCTTTTGATCTCTAGAATCATCATATTATGTGTTGGGGGAACAGCTTTTTTGTGTGCAGTTGCGACGGGATGCTTATCACGCTATAGTCGCAGAAGGATAATATCAGATGAACCTGCCATTACCATCAACATTACAAGGATGGGGGTGGGTTTGGATGAGTCAACAATCGAATCTTTTGAGAAGATTGTATTAGGGGAGAGTCGACGACTGCCGGGAGTGGAACACAACGATGGAACCAGATGTTGCCCAATATGTCTCTCAGAGTACAACAGTAAGGACGTAATCAGATGCATTCCTGAATGCAGACATTGCTTCCATGCTCATTGCATTGATGAATGGCTTCGCATGAACAGCACATGCCCAGTTTGCCGTAACTCTCCCTCTCCTCATTTCCCATGA 1098 0.3925 MNFLFHLFILFPVIYTLENSCQNSWCSENNILIRFPFRLEVEGDQYSYCGYPGFELSCTNDSRIILTLPYSGVFYVREIDYLRQYIQVYDPQRCLPNRLLSLNLSGSPFVTGFLTNYTLLSCSTPNIGSQFIPVDCLSSSTHFVSVIPSLSFTGSLPQSCYVIRNLSVPVDSSYQDFFLNNQLSEDFELTWSSPNCRYCELQDDMCGLESRNSDQVRCFSNNTNQQTGHSQNNLLISRIIILCVGGTAFLCAVATGCLSRYSRRRIISDEPAITINITRMGVGLDESTIESFEKIVLGESRRLPGVEHNDGTRCCPICLSEYNSKDVIRCIPECRHCFHAHCIDEWLRMNSTCPVCRNSPSPHFP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05257 365 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Vivi6g05257 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 362 IPR013083 -
Vivi6g05257 365 Pfam Ring finger domain 315 357 IPR001841 -
Vivi6g05257 365 CDD RING-H2_EL5-like 314 357 - -
Vivi6g05257 365 SMART ring_2 315 356 IPR001841 -
Vivi6g05257 365 Pfam Wall-associated receptor kinase galacturonan-binding 21 90 IPR025287 GO:0030247
Vivi6g05257 365 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 361 IPR046948 -
Vivi6g05257 365 SUPERFAMILY RING/U-box 314 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05257 Vivi-Chr6 157274025 157275711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05257 21 362 C3H Transcription Factor Family AT2G46495 40.286 2.16e-76 237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05257 6 157274025 157275711 Vivi7g04260 7 111193528 111195407 PCT