Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05256 ATGGAAGAAGAAAAGAGCCATAGAATGTTCAACCTCTTCGTGAAGCACTTGAACGGTAAAACCCTAACCCTATTATTCCCATCTCCGATCCTTTCCGCAACTTCCATCAAGGATCGTCTCTTCCATCTCACCGGAATCCCAACCCAACACCAGCGCCTCGTCACCGGTTGCCGCCACCTCAACGACGATAAATCGGTGATATGCTGTTCGCCGGAAGAAGGAAACATGTTCCCCTCCGTGCGTCTTCTTCTCCGTTTGAAAGGCGGGAAGGGAGGATTTGGATCGCTGTTGCGTGGGGCGGCGACGAAAGCAGGGCAGAAGAAGACGAACAATTTTGATGCATGTAGGGATATGAGCGGAAGAAGATTGAGACATGTTAATGCTGAGAAGAGGTTGGAGGAATGGAGAGATGGTGAGGAGGATAGGAAGCTTGAGAAGGTTGCGGAGGATTTTCTGAAGAAACAGATGAAGAAGAATAAGGGGAAGGGTAAGAGTGGTGGTGTTGAGGGTGAGGCTCAGAAGTATGTTGCAAAATATAGGGAACAGTCTGAACGATGTGTTGCGGAGGTTGCTTTGTCTGTTCAGGAGTCTCTCAGAAATTCTAAGCGGAAGTCTTCCATAATATCGGAAGCTCCCCATCCTCGCGATCCCAAGAAATTGAAGATATGGATGGGGAAGAGGGCACTGAGTGACAGTGACAGTAGTGATGATTCTGATGAAGATGTTAATGATGTTGAGGAAGAAACTGAGAAATCTGTTTTGTTAAATAGTCAGAACGAGTCGGGGTTAAACAAAGCTGATGATAGTTCTGATTCTGTGACTGGTCTAAAGAGGGACGGAGGCTCATCTGGGGTTGGCTCGTGTGAGAGTGGATCTGAGGAAGAAAAGGAAGCTGTTGTTGAAGAAGGCAAAGTGGAAACTGTTGAAGGATCCCCCCAAAGTAATGGAACTATTGAGGCAAAACTGAGTGTTGCTGCTGAACCCATGCTAAATGATGACATGACTGAGGCTAAAGTTGTTCCTTGTTCTGAGATGTTGGATTCTGGAATTAGTGCTCAAGATATTGTCTGTCAGGATCACAAGGTTGATGTTACTGTTACTCAAGCCTCAGATCTTGTGAGCTCTGAAATTGTGCCTAATGACATGGAAATTGACGGTTCTCTTGAGCATAGACCAGCTGTCAATGAAGAAAGCTTGCCAAGCACTATTGTTCCAGCAAAAGAAGAGCCTCTAAATCTTGATGCTTTTAATTCAGCAGCAGAACTTGAGGTTCTTGGCTTGGAAAAGTTGAAGACTGAACTCCAGTCACAGGGACTAAAATGCGGAGGTACTTTGCAGGAGCGTGCTGCCAGACTTTTTCTTTTAAAATCGACACCCCTGGATAAACTTCCAAAGAAACTGCTAGCGAAGAAATGA 1416 0.4569 MEEEKSHRMFNLFVKHLNGKTLTLLFPSPILSATSIKDRLFHLTGIPTQHQRLVTGCRHLNDDKSVICCSPEEGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWRDGEEDRKLEKVAEDFLKKQMKKNKGKGKSGGVEGEAQKYVAKYREQSERCVAEVALSVQESLRNSKRKSSIISEAPHPRDPKKLKIWMGKRALSDSDSSDDSDEDVNDVEEETEKSVLLNSQNESGLNKADDSSDSVTGLKRDGGSSGVGSCESGSEEEKEAVVEEGKVETVEGSPQSNGTIEAKLSVAAEPMLNDDMTEAKVVPCSEMLDSGISAQDIVCQDHKVDVTVTQASDLVSSEIVPNDMEIDGSLEHRPAVNEESLPSTIVPAKEEPLNLDAFNSAAELEVLGLEKLKTELQSQGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05256 471 MobiDBLite consensus disorder prediction 254 270 - -
Vivi6g05256 471 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 162 IPR024974 -
Vivi6g05256 471 ProSiteProfiles Ubiquitin domain profile. 10 66 IPR000626 GO:0005515
Vivi6g05256 471 PANTHER SPLICING FACTOR SF3A-RELATED 11 470 - -
Vivi6g05256 471 MobiDBLite consensus disorder prediction 290 304 - -
Vivi6g05256 471 Pfam Replication stress response SDE2 C-terminal 398 470 IPR025086 -
Vivi6g05256 471 Coils Coil 417 437 - -
Vivi6g05256 471 MobiDBLite consensus disorder prediction 198 316 - -
Vivi6g05256 471 MobiDBLite consensus disorder prediction 206 233 - -
Vivi6g05256 471 SUPERFAMILY Ubiquitin-like 6 75 IPR029071 -
Vivi6g05256 471 CDD Ubl_ubiquitin_like 12 77 - -
Vivi6g05256 471 Gene3D - 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05256 Vivi-Chr6 157270686 157274022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05256 397 470 C2H2 Transcription Factor Family AT5G06160 47.297 1.28e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05256 K25059 - gmx:100781694 481.1