Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05250 ATGGATATCGAAGAGGACATTCGATCTTTACAGCTTGACTCAGCAGATCCAAAGCAGGAGGTTCAGGCTCAGGCTGTTGAGGTCGAGCCAAAAGCAAAAGATAAGGAAAATCAGGCTGTTGAGGTCGAGCCAAAAGCAAAAGATAAGGAAATTCCTCCTGTTCAAGATGAAGAAGTTGAGCAGATGGAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGACGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACCATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTACATGGCTTATATTATGGACACAAACGAGGAGGAGAGAGCAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACAACGAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGACATTGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTCGTGGTTGTCAATAAAATGGACGATCCTACAGTAAACTGGGAAAAAGAAAGGTATGATGAAATCGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCGTTTTTACCAATATCGGGGCTCATGGGTTTTAACTTAAAAACTAGAATGGATAAAAGCACTTGTTCATGGTGGGACGGGCCTTGCTTATTTGAAGCCCTTGATAGTATCGATGTTCCTATGGGAGATCCCAAAAATCCTTTCAGGATGCCTATAATTGACAAGTTCAAAGACATGGGAACTGTTACTATGGGGAAAGTTGAATCTGGGACTATTCGGGAGGGAGATTCCCTTTTCGTCATGCCAAATAAGGATCATGTTAAAGTTGTTGCTGTATATATTGATGAGAATCGGGTTAAACGTGCCGGACCTGGTGAAAATTTACGGGTTCGATTGTCTGGTGTTGAAGAAGAAGACATATCATCTGGGTTCGTCCTTTGTAGTGTTGCAAAACCAATACCAGCAGTTACCGAGTTTGTTGCTCAGTTGGCAATACTTGAATTATTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAACTATTGCATCAAATTGATCCAAAGACAAGGAAGCCCATGAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTGTTGTATTATGCCGTGTTCAGGTTAGTAACTTGATATGCGTTGAGAAGTTCTCTGATTATCCACAACTAGGGAGGTTTACTCTTCGTACTGAAGGAAAAACTGTTGCTGTGGGAAAAATCACTGATATGTGA 1473 0.4189 MDIEEDIRSLQLDSADPKQEVQAQAVEVEPKAKDKENQAVEVEPKAKDKEIPPVQDEEVEQMEKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWEKERYDEIESKMIPFLKQSGYNVKKDVSFLPISGLMGFNLKTRMDKSTCSWWDGPCLFEALDSIDVPMGDPKNPFRMPIIDKFKDMGTVTMGKVESGTIREGDSLFVMPNKDHVKVVAVYIDENRVKRAGPGENLRVRLSGVEEEDISSGFVLCSVAKPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHVHSVVEECEIVELLHQIDPKTRKPMKKKVLFVKNGAVVLCRVQVSNLICVEKFSDYPQLGRFTLRTEGKTVAVGKITDM 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05250 490 CDD eRF3_II 295 376 - -
Vivi6g05250 490 Pfam Elongation factor Tu domain 2 308 375 IPR004161 GO:0005525
Vivi6g05250 490 FunFam Putative translation elongation/initiation factor family protein 382 490 - -
Vivi6g05250 490 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 293 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 Pfam Elongation factor Tu C-terminal domain 381 489 IPR004160 -
Vivi6g05250 490 Gene3D - 45 288 IPR027417 -
Vivi6g05250 490 Pfam Elongation factor Tu GTP binding domain 64 266 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 299 IPR027417 -
Vivi6g05250 490 MobiDBLite consensus disorder prediction 27 56 - -
Vivi6g05250 490 MobiDBLite consensus disorder prediction 1 56 - -
Vivi6g05250 490 CDD EF1_alpha 68 288 - -
Vivi6g05250 490 Gene3D Translation factors 293 378 - -
Vivi6g05250 490 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 42 288 - -
Vivi6g05250 490 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 120 135 IPR031157 -
Vivi6g05250 490 PANTHER TRANSLATION FACTOR 55 489 - -
Vivi6g05250 490 CDD eRF3_C_III 382 489 - -
Vivi6g05250 490 Gene3D Translation factors 383 490 - -
Vivi6g05250 490 PRINTS GTP-binding elongation factor signature 127 135 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 PRINTS GTP-binding elongation factor signature 147 157 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 PRINTS GTP-binding elongation factor signature 68 81 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 PRINTS GTP-binding elongation factor signature 163 174 IPR000795 GO:0003924|GO:0005525
Vivi6g05250 490 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 385 489 IPR009001 -
Vivi6g05250 490 SUPERFAMILY Translation proteins 288 380 IPR009000 -
Vivi6g05250 490 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 292 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05250 Vivi-Chr6 157196839 157206737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05250 63 487 Eukaryotic Initiation Factors Gene Family AT5G60390 38.318 7.59e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05250 K03267 - gmx:100793653 825.469