Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05248 ATGGATATCGAAGAGGACATTCGATCTTTACAGCTTGACTCAGCAGATCCAAAGCAGGAGGTTCAGGCTCAGGCTGTTGAGGTCGAGCCAAAAGATAAGGAAAATCAGGCTGTTGAGGTCGAGCCAAAAGCAAAAGATAAGGAAATTCCTCCTGTTCAAGATGAAGAAGTTGAGCAGATGGAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGACGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACCATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTACATGGCTTATATTATGGACACAAACGAGGAGGAGAGAGCAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACAACGAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGACATTGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTCGTGGTTGTCAATAAAATGGACGATCCTACAGTAAACTGGGAAAAAGAAAGGTATGATGAAATCGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCGTTTTTACCAATATCGGGGCTCATGGGTTTTAACTTAAAAACTAGAATGGATAAAAGCACTTGTTCATGGTGGGACGGGCCTTGCTTATTTGAAGCCCTTGATAGTATCGATGTTCCTATGGGAGATCCCAAAAATCCTTTCAGGATGCCTATAATTGACAAGTTCAAAGACATGGGAACTGTTACTATGGGGAAAGTTGAATCTGGGACTATTCGGGAGGGAGATTCCCTTTTCGTCATGCCAAATAAGGATCATGTTAAAGTTGTTGCTGTATATATTGATGAGAATCGGGTTAAACGTGCCGGACCTGGTGAAAATTTACGGGTTCGATTGTCTGGTGTTGAAGAAGAAGACATATCATCTGGGTTCGTCCTTTGTAGTGTTGCAAAACCAATACCAGCAGTTACCGAGTTTGTTGCTCAGTTGGCAATACTTGAATTATTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAACTATTGCATCAAATTGATCCAAAGACAAGGAAGCCCATGAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTGTTGTATTATGCCGTGTTCAGGTTAGTAACTTGATATGCGTTGAGAAGTTCTCTGATTATCCACAACTAGGGAGGTTTACTCTTCGTACTGAAGGAAAAACTGTTGCTGTGGGAAAAATCACTGATATGTGA 1467 0.4192 MDIEEDIRSLQLDSADPKQEVQAQAVEVEPKDKENQAVEVEPKAKDKEIPPVQDEEVEQMEKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWEKERYDEIESKMIPFLKQSGYNVKKDVSFLPISGLMGFNLKTRMDKSTCSWWDGPCLFEALDSIDVPMGDPKNPFRMPIIDKFKDMGTVTMGKVESGTIREGDSLFVMPNKDHVKVVAVYIDENRVKRAGPGENLRVRLSGVEEEDISSGFVLCSVAKPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHVHSVVEECEIVELLHQIDPKTRKPMKKKVLFVKNGAVVLCRVQVSNLICVEKFSDYPQLGRFTLRTEGKTVAVGKITDM 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05248 488 CDD EF1_alpha 66 286 - -
Vivi6g05248 488 Pfam Elongation factor Tu C-terminal domain 379 487 IPR004160 -
Vivi6g05248 488 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 290 376 - -
Vivi6g05248 488 Gene3D Translation factors 291 376 - -
Vivi6g05248 488 MobiDBLite consensus disorder prediction 1 54 - -
Vivi6g05248 488 Pfam Elongation factor Tu domain 2 306 373 IPR004161 GO:0005525
Vivi6g05248 488 CDD eRF3_C_III 380 487 - -
Vivi6g05248 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 297 IPR027417 -
Vivi6g05248 488 PANTHER TRANSLATION FACTOR 54 487 - -
Vivi6g05248 488 Gene3D - 43 286 IPR027417 -
Vivi6g05248 488 CDD eRF3_II 293 374 - -
Vivi6g05248 488 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 383 487 IPR009001 -
Vivi6g05248 488 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 291 IPR000795 GO:0003924|GO:0005525
Vivi6g05248 488 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 41 286 - -
Vivi6g05248 488 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Vivi6g05248 488 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Vivi6g05248 488 PRINTS GTP-binding elongation factor signature 125 133 IPR000795 GO:0003924|GO:0005525
Vivi6g05248 488 PRINTS GTP-binding elongation factor signature 145 155 IPR000795 GO:0003924|GO:0005525
Vivi6g05248 488 PRINTS GTP-binding elongation factor signature 161 172 IPR000795 GO:0003924|GO:0005525
Vivi6g05248 488 MobiDBLite consensus disorder prediction 25 54 - -
Vivi6g05248 488 Gene3D Translation factors 381 488 - -
Vivi6g05248 488 SUPERFAMILY Translation proteins 286 378 IPR009000 -
Vivi6g05248 488 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 118 133 IPR031157 -
Vivi6g05248 488 FunFam Putative translation elongation/initiation factor family protein 380 488 - -
Vivi6g05248 488 Pfam Elongation factor Tu GTP binding domain 62 264 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05248 Vivi-Chr6 157196838 157206737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05248 61 485 Eukaryotic Initiation Factors Gene Family AT5G60390 38.318 6.48e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05248 K03267 - gmx:100793653 825.083