Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05246 ATGGATATCGAAGAGGACATTCGATCTTTACAGCTTGACTCAGCAGAAGATGTTAACGGGGTGGTAAATCCAGAAGAAGAGAAGCCAGATGTTGATAATTTAGATAAGATGGACGAAGATCCAAAGCAGGAGGTTCAGGCTCAGGCTGTTGAGGTCGAGCCAAAAGCAAAAGATAAGGAAAATCAGGCTGTTGAGGTCGAGCCAAAAGCAAAAGATAAGGAAATTCCTCCTGTTCAAGATGAAGAAGTTGAGCAGATGGAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGACGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACCATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGCTGGTACATGGCTTATATTATGGACACAAACGAGGAGGAGAGAGCAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACAACGAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGACATTGGAGTGTTGGTAATTTCTGCCCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTCGTGGTTGTCAATAAAATGGACGATCCTACAGTAAACTGGGAAAAAGAAAGGTATGATGAAATCGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCGTTTTTACCAATATCGGGGCTCATGGGTTTTAACTTAAAAACTAGAATGGATAAAAGCACTTGTTCATGGTGGGACGGGCCTTGCTTATTTGAAGCCCTTGATAGTATCGATGTTCCTATGGGAGATCCCAAAAATCCTTTCAGGATGCCTATAATTGACAAGTTCAAAGACATGGGAACTGTTACTATGGGGAAAGTTGAATCTGGGACTATTCGGGAGGGAGATTCCCTTTTCGTCATGCCAAATAAGGATCATGTTAAAGTTGTTGCTGTATATATTGATGAGAATCGGGTTAAACGTGCCGGACCTGGTGAAAATTTACGGGTTCGATTGTCTGGTGTTGAAGAAGAAGACATATCATCTGGGTTCGTCCTTTGTAGTGTTGCAAAACCAATACCAGCAGTTACCGAGTTTGTTGCTCAGTTGGCAATACTTGAATTATTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAACTATTGCATCAAATTGATCCAAAGACAAGGAAGCCCATGAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTGTTGTATTATGCCGTGTTCAGGTTAGTAACTTGATATGCGTTGAGAAGTTCTCTGATTATCCACAACTAGGGAGGTTTACTCTTCGTACTGAAGGAAAAACTGTTGCTGTGGGAAAAATCACTGATATGTGA 1545 0.4175 MDIEEDIRSLQLDSAEDVNGVVNPEEEKPDVDNLDKMDEDPKQEVQAQAVEVEPKAKDKENQAVEVEPKAKDKEIPPVQDEEVEQMEKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWEKERYDEIESKMIPFLKQSGYNVKKDVSFLPISGLMGFNLKTRMDKSTCSWWDGPCLFEALDSIDVPMGDPKNPFRMPIIDKFKDMGTVTMGKVESGTIREGDSLFVMPNKDHVKVVAVYIDENRVKRAGPGENLRVRLSGVEEEDISSGFVLCSVAKPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHVHSVVEECEIVELLHQIDPKTRKPMKKKVLFVKNGAVVLCRVQVSNLICVEKFSDYPQLGRFTLRTEGKTVAVGKITDM 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05246 514 CDD eRF3_II 319 400 - -
Vivi6g05246 514 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 66 312 - -
Vivi6g05246 514 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 144 159 IPR031157 -
Vivi6g05246 514 PRINTS GTP-binding elongation factor signature 151 159 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 PRINTS GTP-binding elongation factor signature 171 181 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 PRINTS GTP-binding elongation factor signature 187 198 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 PRINTS GTP-binding elongation factor signature 92 105 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 PRINTS GTP-binding elongation factor signature 231 240 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 323 IPR027417 -
Vivi6g05246 514 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 409 513 IPR009001 -
Vivi6g05246 514 Pfam Elongation factor Tu C-terminal domain 405 513 IPR004160 -
Vivi6g05246 514 SUPERFAMILY Translation proteins 312 404 IPR009000 -
Vivi6g05246 514 Gene3D Translation factors 407 514 - -
Vivi6g05246 514 Gene3D Translation factors 317 402 - -
Vivi6g05246 514 CDD EF1_alpha 92 312 - -
Vivi6g05246 514 MobiDBLite consensus disorder prediction 1 80 - -
Vivi6g05246 514 CDD eRF3_C_III 406 513 - -
Vivi6g05246 514 Gene3D - 69 312 IPR027417 -
Vivi6g05246 514 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 88 317 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 FunFam Putative translation elongation/initiation factor family protein 406 514 - -
Vivi6g05246 514 PANTHER TRANSLATION FACTOR 79 513 - -
Vivi6g05246 514 MobiDBLite consensus disorder prediction 21 80 - -
Vivi6g05246 514 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 316 402 - -
Vivi6g05246 514 Pfam Elongation factor Tu GTP binding domain 88 290 IPR000795 GO:0003924|GO:0005525
Vivi6g05246 514 Pfam Elongation factor Tu domain 2 332 399 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05246 Vivi-Chr6 157196838 157206737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05246 87 511 Eukaryotic Initiation Factors Gene Family AT5G60390 38.318 1.51e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05246 K03267 - gmx:100793653 867.84