LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g05183	ATGAGTTGCTTTCCTTGTTTTAATTCTCAAAGGAGTAAGAAAAGCAACAGCAAGAGGGAACATGGGGTTGCGCCGCCGCCGGAAAACAACACCCTTATAACAAGAACACCAGATATAAAGAAACCAAAACCAGAAGAAACAAACCAAGTTGACACATCAAATATTCAAGCACAGAATTTCACATTTCGCGAGTTGGCGATTGCGACCAAGAATTTCAGGCAAGAGTGTTTGATGGGGGAAGGTGGATTTGGCAGAGTTTACAAAGGAACAATTCCTGCAACAGGACAGGTGGTAGCAGTGAAACAACTTGACAGAAATGGGAGTCAAGGAAGTAAAGAATTTTTGGTTGAGGTTTTGATGTTGAGTCTCTTAAACCATGAAAATTTGGTTAAACTCATTGGTTATTGCGCTGATGGCGATCAACGTCTTTTGGTGTATGAGTTCATGTCAGGAGGTTCTCTAGAAAGTTGTCTTCTAGAGAGAAAACCCGAACAACCTCAATTAGATTGGTATAGCAGAATGAAAATAGCATCAAATACTGCGAAAGGACTATGGTACTTGCACGACAAGGCAAATCCCTCGGTTATTTATAGGGACTTGAAATCTTCCAACATTTTGCTTGATAATGACCATAATGCAAAACTATCTGATTACGGACTAGCGAAACTTGCTGGTAAAGATAAGATGAACATTGTTCCTACAAGAGTAATGGGCACTTATGGTTATAGTGCGCCCGAGTATGTAAGAACGGGTAATCTCACCTTGAAATCAGATGTGTATAGCTTTGGAGTTGTTTTGCTAGAACTCATAACAGGAAGACGGGCCGTTGACACCACAAAATCGCACGATGAGCAAAATCTAGTTTCATGGGCACAACCGATATTTAGAGATCCAAAAAAGTATGGAGATTTGGCAGATCCAAAGCTGAAATATTATCCCGACAAGGATCTGAATCAGGTTGTTGCAATTGCAGCCATGTGCTTACAGGAGGAAGCCGCTGCGCGTCCTTTGATGAGTGATGTTGTAACTGCTTTGAGTTTTCTTTCAACTTCTCCTCCTCCTGAAGGTGTTCCTGAACCTCCTCCACCTCCCAAATCCGCCTCCCAAAAGAGTGTTGCCACTGCCAGTGAAAGCGAGAGTGAGAGCGAGAGCGAGAGCGAGAGCGAGAACGAAGGCAATAAGAATAAACAGCCTATTACAGCAGATAGTGCGAAATACGAAGAATGTGAAGATGGATCAGACAATGAATGTGACTATTATGAGAATGAAAACCATGATTATAGTCCACAAGATACTAAAAAAATAAAGGAGTTTTACTCTCAATCAAGCCGCAAAAGCAGCACCAAATCAAAGAACTCGAGTTCAGGATCAGAAAGTGGTCGCAAAAGCAGTAGGAGAAAGCAAGGCGTGGATGGAAGTTTATCTCAGAAAAGCAGCAAAAAATCGGCTGCAGGAGATTTAAGCCAGAAGAGCAGTATGAAATCTCGCGCAAAGGATTTAAGCCAAAAGAGCAGTAAAAAATCTTCAAAGGTTAAAAATCACTCGTCTGATAGCAGCAGCGACTCGGACTCACAGGATGAAAGTGTTCTTTTAAAGCATGGTGACAGTAGGAAATCACAAGATGGAAATGGATATTCTTTTGGGCTAATAAGCAGTGATAGCGGGGAAGGATCACACATAGACGTTCATCATTTTAATCGTGTCAGCATGGGGCCATCTGAGGACGGAAGTTCTCACCATTTCGACCATTCCAGCAGCGGAGGATCAGAGGAGGGAAGCGTTCATTCACCACGATAG	1797	0.424	MSCFPCFNSQRSKKSNSKREHGVAPPPENNTLITRTPDIKKPKPEETNQVDTSNIQAQNFTFRELAIATKNFRQECLMGEGGFGRVYKGTIPATGQVVAVKQLDRNGSQGSKEFLVEVLMLSLLNHENLVKLIGYCADGDQRLLVYEFMSGGSLESCLLERKPEQPQLDWYSRMKIASNTAKGLWYLHDKANPSVIYRDLKSSNILLDNDHNAKLSDYGLAKLAGKDKMNIVPTRVMGTYGYSAPEYVRTGNLTLKSDVYSFGVVLLELITGRRAVDTTKSHDEQNLVSWAQPIFRDPKKYGDLADPKLKYYPDKDLNQVVAIAAMCLQEEAAARPLMSDVVTALSFLSTSPPPEGVPEPPPPPKSASQKSVATASESESESESESESENEGNKNKQPITADSAKYEECEDGSDNECDYYENENHDYSPQDTKKIKEFYSQSSRKSSTKSKNSSSGSESGRKSSRRKQGVDGSLSQKSSKKSAAGDLSQKSSMKSRAKDLSQKSSKKSSKVKNHSSDSSSDSDSQDESVLLKHGDSRKSQDGNGYSFGLISSDSGEGSHIDVHHFNRVSMGPSEDGSSHHFDHSSSGGSEEGSVHSPR	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g05183	598	Pfam	Protein kinase domain	74	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	353	367	-	-
	Vivi6g05183	598	FunFam	probable serine/threonine-protein kinase RLCKVII	44	148	-	-
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	441	459	-	-
	Vivi6g05183	598	ProSiteProfiles	Protein kinase domain profile.	72	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	349	598	-	-
	Vivi6g05183	598	PANTHER	OS07G0668900 PROTEIN	3	352	-	-
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	469	491	-	-
	Vivi6g05183	598	SUPERFAMILY	Protein kinase-like (PK-like)	58	380	IPR011009	-
	Vivi6g05183	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	195	207	IPR008271	GO:0004672\|GO:0006468
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	492	539	-	-
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	418	440	-	-
	Vivi6g05183	598	Gene3D	Transferase(Phosphotransferase) domain 1	149	352	-	-
	Vivi6g05183	598	SMART	serkin_6	72	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g05183	598	CDD	STKc_IRAK	78	345	-	-
	Vivi6g05183	598	MobiDBLite	consensus disorder prediction	1	52	-	-
	Vivi6g05183	598	FunFam	Serine/threonine-protein kinase PBS1	149	356	-	-
	Vivi6g05183	598	Gene3D	Phosphorylase Kinase; domain 1	35	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g05183	Vivi-Chr6	156241690	156244647	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g05183	1	392	Glycoside Hydrolase	AT3G07070	59.601	3.47e-163	470

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Vivi6g05183		Pkinase	3.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g05183	-		-	gmx:100807682	655.981