Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05182 ATGCCATTTGGTGAATGTGGAAGTGTGAAAGAAGATATAACAAACTGGGGCAGCACTAGTGATGGTTTCCCAGCCACTTTCTGCTGCAGAAACTCTCTCACACTACTCTCCGATGCCCTCGCCTCGCAAGTCCGTAACTCAACAGGCCAAATCTTCCCTTCTCAACAACAATGGCAGAGTTGCAACAAATCATTCCATCCACAACAAGGAATGTCACTGTCCTCATGTGGCTTTGATAGCATTTACTTTGGTAGCTCCAGATGTTCTAATTTATATCTGCTAGATGCTCAGAACTTGCAACAGTTCACTGATGCATTGGAAACATGTAGCCACTTTGACCGTTCGCTTGAAGAATCGTGTTTGGATTGTACGAGTGCGATTTTGAGCTTACGAGATGGTTTGTATGATAAAATGGTTGGCAAAGACAACTACAATGATACCGAGAGAGCCATATGTGGTGTAGCAGCTCTTGTTTCTGTCGCTTTTGAACAACAAGATGATCCTTTCCTTGCAGACAAATTCTTGCGATGCTTTCCGCCTCCCGCAGTATATAACAAGAAATCATCGATGAAGAAACTTGTGTTGGCAGTATTGGTGGTAGCGATCCTAGCATTATTGATTATTGTTTTTCTGGTAAAATGTGTATCAAAGAAAAAGCCTATTAAGAAGCATGCTCAGTTGAAACAGATAGCTACTTGGTCTGGACTTTACTGGTTCACGAAAACCGAAATTGAAAATGCGATGAACTTTGAAAATGAAAAGATAAACCTCGGACGTGGGAGTGCAGGCGAGGTGTATAGAGGTGTTTTGCCTAGCGGACAAGTTGTGGCCATCAAGCATTTGATAAAGAGTAACACATCGAGTTCTGATTCGTTCACCCGAGAACTTGCAGGTCTTTCTAGGCTTCGTCACCCGAACCTGGTTTGCTTGTTTGGTTGTTGCATGGAAGATGGTGAGAGATATTTAGTCTACGAGTTTTGCGCGAATGGAAATCTTGCTCAACATCTCTTGAGAAGAGATAGTCATTTGACATGGGAAGCAAGAGTGAGGATTCTGCGAGAATGTTCATTTGCGCTTAAGTATCTCCATCATCATATCGAGGGTTGTGTTGTACATAGAGATATCAAGCTTACGAACATTCTTTTGACTGAGAAATACGAAGCCAAACTGTCGGATTTCGGATTGTCAAGGATGATGGGGATGGAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATAGGCTATATGGATCCCGAGTACATGAGTAATGCGAAGCTAACTTGCGCGAGTGATGTATACAGTTTCGGAATTGTTGCTTTGCAAATTCTGTCAGGACAGAAAGTCATAGAATTGGATCTCGATGCTCGAGACCAGCTTACCAGAAAGGCAAGAGATGTGAGTATGGGAAAGCGTCCACTGTCGGATTTTGTAGACTCGCGACTAAAGGGACAAGTTGATAAGACAGATTTCGGAACCATTTTACAGATTGCAGTACTTTGCGTTGCAAAATCAAGCACAGGTCGTCCTTCAATCGAGGTCGTTTTTGACGAATTGGACAAAGTCTATAGGGACATAGAAGCACGCAAGAAGGCAACCCCAACACCATCAACAACAACAACAACAACAACAACATCAACATCAACATCTAGCTCTAATTGA 1662 0.4266 MPFGECGSVKEDITNWGSTSDGFPATFCCRNSLTLLSDALASQVRNSTGQIFPSQQQWQSCNKSFHPQQGMSLSSCGFDSIYFGSSRCSNLYLLDAQNLQQFTDALETCSHFDRSLEESCLDCTSAILSLRDGLYDKMVGKDNYNDTERAICGVAALVSVAFEQQDDPFLADKFLRCFPPPAVYNKKSSMKKLVLAVLVVAILALLIIVFLVKCVSKKKPIKKHAQLKQIATWSGLYWFTKTEIENAMNFENEKINLGRGSAGEVYRGVLPSGQVVAIKHLIKSNTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCANGNLAQHLLRRDSHLTWEARVRILRECSFALKYLHHHIEGCVVHRDIKLTNILLTEKYEAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFVDSRLKGQVDKTDFGTILQIAVLCVAKSSTGRPSIEVVFDELDKVYRDIEARKKATPTPSTTTTTTTTSTSTSSSN 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05182 553 MobiDBLite consensus disorder prediction 527 553 - -
Vivi6g05182 553 Gene3D Phosphorylase Kinase; domain 1 221 326 - -
Vivi6g05182 553 SMART serkin_6 250 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05182 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Vivi6g05182 553 Pfam SPARK 21 143 IPR043891 -
Vivi6g05182 553 Pfam Protein kinase domain 255 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05182 553 MobiDBLite consensus disorder prediction 532 553 - -
Vivi6g05182 553 FunFam probable receptor-like protein kinase At5g59700 327 537 - -
Vivi6g05182 553 Gene3D Transferase(Phosphotransferase) domain 1 327 545 - -
Vivi6g05182 553 SUPERFAMILY Protein kinase-like (PK-like) 256 545 IPR011009 -
Vivi6g05182 553 ProSiteProfiles Protein kinase domain profile. 251 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05182 553 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05182 Vivi-Chr6 156239031 156241312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05182 239 533 Receptor kinase-like Gene Family AT1G16260 36.700 6.41e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vivi6g05182 Pkinase 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05182 - - gmx:100807158 744.962