Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05166 ATGCGTGTTTGTGCGACGGTTATGACGGCGAAAATGGAGGAAAAAACCGCATCGGAATTAAAGGAACGGTTATGGAAAATCGTGAAGACTATTGTTGACTCCGACGACTATACTGTGCAAAACGTCGATGATGCAATCGCGGCACTTTCTTCTCTGAAAGATTTCAAGTCTCGTTCGAATTCGATTTCGAATCGAACGAACTCTTTTGATGATAAATTGGACGAATTTGCCCCTCCGAGTGAATTTCGGTGCCCTATTTCTACTCAGTTGATGATCGATCCTGTTATCTTGTCCACTGGACAGACTTATGATCGGCCGTTTATTCAGAGGTGGTTAAATGAAGGCAATAGAACATGCCCTCAAACCCAGCAAGTTCTATCTCATACAATTCTTACACCTAATTACTTGGTCCGAGACATGATTGCGCAGTGGTGTAAGGAGCGTGGACTTGAGCTACCACAGCCTACTCGGGATATGGATGAAGTTGTAACTGATGCTGACAGAGGCCGTTTAAATGCATTGCTTCATAAGTTGTCCTTGTCTGTTTCTGATCAGAAAGCAGCTGCGAAAGAGCTTCGTTTGTTAACGAAGCGAACACCTTCGTTTCGAACCCTTTTTAAGGAGTCTGGTGATGAGATCACGCAGTTGCTTCGTCCATTATTGCCAGGTGGTGCTTGTCCTCACCCTGATCTTCAAGAGGATTTGATCACAACTGTTCTGAATCTCTCAATTCTTGACGATAATAAGAAAGTTTTTGCCGAGGATCCAACCGTCATTAACCTGCTGATTGATGCGTTGAAATGGGGAACCATTTCAACAAAAAGCAATGCTGCAGCAGCTATTTTCACCTTATCGGCTGTTGATTCCAACAAGTTCATCATTGGGAAATCTGGAGCTATCAAACATTTGCTCGGCCTTCTAGACGAGGGACATACATTTGCCATGAAAGATGCTGCATCAGCCATATATAGCCTATGTCTGGTCCATGATAATAAAGAGAGGACTGTACGAGAAGGAGCAGTTAAAGTCATTTTGAACAAGATCATGAACCACATTCTAGTTGACGAGCTGTTGTCTATACTGGCACTCCTCTCCAGTCATCCCGACGCTGTTGAAGAAATGGGCAATCGCAACGCTGTTCCTTTCTTAATGAGGAATATTCGGGATAGCACATCAGAAAGATGCAAGGAAAATTGCGTTGCAATTTTATACACAATCTGTTATAGTCGTCGAACAAAGTTGAAGGAAATCAAAGAAGAAGAAAAGGCCAACGGAACACTCTCTACGCTAGCACAATGCGGAACTTCAAGAGCGAAAAGGAAGGCCAACAGTATTCTCGAGAGGCTCAACAGATCTCAAACCTTAACTCACACTGCTTAG 1380 0.4341 MRVCATVMTAKMEEKTASELKERLWKIVKTIVDSDDYTVQNVDDAIAALSSLKDFKSRSNSISNRTNSFDDKLDEFAPPSEFRCPISTQLMIDPVILSTGQTYDRPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIAQWCKERGLELPQPTRDMDEVVTDADRGRLNALLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKESGDEITQLLRPLLPGGACPHPDLQEDLITTVLNLSILDDNKKVFAEDPTVINLLIDALKWGTISTKSNAAAAIFTLSAVDSNKFIIGKSGAIKHLLGLLDEGHTFAMKDAASAIYSLCLVHDNKERTVREGAVKVILNKIMNHILVDELLSILALLSSHPDAVEEMGNRNAVPFLMRNIRDSTSERCKENCVAILYTICYSRRTKLKEIKEEEKANGTLSTLAQCGTSRAKRKANSILERLNRSQTLTHTA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05166 459 Gene3D - 211 352 IPR011989 -
Vivi6g05166 459 PANTHER U BOX DOMAIN-CONTAINING 25 449 - -
Vivi6g05166 459 Gene3D - 353 458 IPR011989 -
Vivi6g05166 459 FunFam RING-type E3 ubiquitin transferase 354 455 - -
Vivi6g05166 459 ProSiteProfiles U-box domain profile. 77 151 IPR003613 GO:0004842|GO:0016567
Vivi6g05166 459 SUPERFAMILY RING/U-box 72 154 - -
Vivi6g05166 459 CDD RING-Ubox_PUB 79 131 IPR045210 -
Vivi6g05166 459 SUPERFAMILY ARM repeat 181 449 IPR016024 -
Vivi6g05166 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 151 IPR013083 -
Vivi6g05166 459 Pfam U-box domain 79 148 IPR003613 GO:0004842|GO:0016567
Vivi6g05166 459 FunFam RING-type E3 ubiquitin transferase 77 151 - -
Vivi6g05166 459 SMART Ubox_2 81 144 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05166 Vivi-Chr6 156051157 156053752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05166 140 459 U-box Gene Family AT3G07360 56.442 1.09e-117 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05166 - - gmx:100806619 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05166 6 156051157 156053752 Vivi6g05166 6 156051157 156053752 ECH