Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05151 ATGTTGAAACTCTCTGGCATCCTTCCTTCTTCATCTTCCAGGAATCACCTATTGGAACTTCTTTCGTCTAGGAAAATCCAACTTCGGGATTTCTCTACTCCCACTAATCACTATTCTGCTAAAGGATATAGTTCGGATCGTATATTTGCTCCTTATTCTGTTTACAAGGGAAAAGCTGCATTTTCACTCACTCCTTGTCTTCCAACTTTCACTAAGTTGGATTCTGGGGCTCTCGTGGTTGATCGTCGAGGTTCAATCATGATGAGTTTCGTGCCTGCTGTTGGGGAGCGCAAATATGACTGGGAGAAGAAACAGATATTTGCCCTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATTGGCCCCCAGGAATCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGCCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATAGCAGCGGCTACTTTGTCTCCCTGACTGTTGTCAACTCCGTGTTAAATACCAAAGACAATTTCAGTGTTCCTGTTACAACTGCTGAGTTTTCCGTGATGAGGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGCTGGGATCGTCTAACTACTCAGAAGTCCAGTGAGACAGTAAGGTTTCAACCCAATCGGCAGGCCGGTGGAACAGTTAGCTTTCAACCAAATCGGCAGTCTGGTGGGACAGTTGGCTTTCAACAAAAGATGAGCCCACAGATTTTAGACTTGGAATGGGAAAAGTGA 756 0.4418 MLKLSGILPSSSSRNHLLELLSSRKIQLRDFSTPTNHYSAKGYSSDRIFAPYSVYKGKAAFSLTPCLPTFTKLDSGALVVDRRGSIMMSFVPAVGERKYDWEKKQIFALSATEVGSLIAIGPQESCEFFHDPSMKSSNAGQVRKSLSIKPHSSGYFVSLTVVNSVLNTKDNFSVPVTTAEFSVMRTACSFALPHIMGWDRLTTQKSSETVRFQPNRQAGGTVSFQPNRQSGGTVGFQQKMSPQILDLEWEK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05151 251 Pfam Whirly transcription factor 54 186 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi6g05151 251 SUPERFAMILY ssDNA-binding transcriptional regulator domain 45 210 IPR009044 GO:0003677|GO:0006355
Vivi6g05151 251 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 28 236 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vivi6g05151 251 Gene3D Transcriptional Coactivator Pc4; Chain A 38 211 IPR009044 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05151 32 251 Whirly Transcription Factor Family AT1G71260 58.929 1.71e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vivi6g05151 Whirly 2.9e-55 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05151 K26561 - gmx:100817863 325.479