Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05146 ATGGAACCCAATGACAACCCATTAAGCTCTTTCTTCCACCACCACAACCACCAACAACAACAGCATCACCACCTCCAACAACAACAACAACAACAACCACCACACGGAAATTCCACCACCGTAGCCTCCGCCACCACAACCACCACCACCACCGCTTCTCCCACCAACGGCCTCGATGGATCCCACATACTCTACCCTTCTGCTGTCTCCTCTCAGCTGGAACCAGCTAAGAGAAAAAGAGGAAGACCGAGAAAGTACGGAACTCCAGAACAAGCCCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCACCTACTTCTGATAACAACAACAACAAGAATACCAATTCTTTTACTCCTTCTCCTTCTTTTACTTCTAGGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGTACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGCAATTTATGCAACAAACTAGGGGTGATATATGCATTCTGTCTGCATCTGGTTCCATTTCTAATGCCTCTCTTCGTCAACCGGCATCTTCAGGAGGCAACATTACGTATGAGGGTCGGTTTGATGTTATTTCACTTACCGGTTCCTATGTCCGTAATGAAACTGGGGGGCGAAGTGGTGGTCTCAGTGTGTGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTATTGGTGGGCCTCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTCTATCGACAACAAAAAGGATACTAGTGGTGGTGGAAAAGGTGACGCCTCTGCCGGCAAGTTGCCATCACCAGTTGGCGAATCAGCATCAAGTTTAGGTTTCCGCCAAACAGTTGACAGTTCCAGTGGGAATCCAATGCGGGTAAATGATGAACATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTGACACCTCCCAGGTCCACAGACTGGGGAAGTCATCCAGATTCAAGACATACTGGTTATGACCTATCAGGAAGAACAGGTCACGGGTCACACCAGTCTCCTGAAAATGGTGGCTATGACCAAATTCCTGATTGA 1098 0.469 MEPNDNPLSSFFHHHNHQQQQHHHLQQQQQQQPPHGNSTTVASATTTTTTTASPTNGLDGSHILYPSAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTSDNNNNKNTNSFTPSPSFTSRKSHSLSLGNAGQGFSVHVIAVAAGEDVGQKIMQFMQQTRGDICILSASGSISNASLRQPASSGGNITYEGRFDVISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGIGGPLKAAGPVQVIVGTFSIDNKKDTSGGGKGDASAGKLPSPVGESASSLGFRQTVDSSSGNPMRVNDEHQAMGGSHFMIQQLGLHVTPPRSTDWGSHPDSRHTGYDLSGRTGHGSHQSPENGGYDQIPD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05146 365 MobiDBLite consensus disorder prediction 322 365 - -
Vivi6g05146 365 MobiDBLite consensus disorder prediction 1 15 - -
Vivi6g05146 365 CDD DUF296 143 253 IPR005175 -
Vivi6g05146 365 Gene3D - 142 266 - -
Vivi6g05146 365 MobiDBLite consensus disorder prediction 282 301 - -
Vivi6g05146 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 292 IPR039605 GO:0003680
Vivi6g05146 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 254 IPR005175 -
Vivi6g05146 365 MobiDBLite consensus disorder prediction 22 68 - -
Vivi6g05146 365 MobiDBLite consensus disorder prediction 1 132 - -
Vivi6g05146 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 253 - -
Vivi6g05146 365 MobiDBLite consensus disorder prediction 94 132 - -
Vivi6g05146 365 MobiDBLite consensus disorder prediction 257 304 - -
Vivi6g05146 365 ProSiteProfiles PPC domain profile profile. 137 278 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05146 Vivi-Chr6 155614453 155618962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05146 39 365 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 49.591 1.80e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05146 - - gmx:100809675 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05146 6 155614453 155618962 Vivi6g05146 6 155614453 155618962 ECH