LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g05146	ATGGAACCCAATGACAACCCATTAAGCTCTTTCTTCCACCACCACAACCACCAACAACAACAGCATCACCACCTCCAACAACAACAACAACAACAACCACCACACGGAAATTCCACCACCGTAGCCTCCGCCACCACAACCACCACCACCACCGCTTCTCCCACCAACGGCCTCGATGGATCCCACATACTCTACCCTTCTGCTGTCTCCTCTCAGCTGGAACCAGCTAAGAGAAAAAGAGGAAGACCGAGAAAGTACGGAACTCCAGAACAAGCCCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCACCTACTTCTGATAACAACAACAACAAGAATACCAATTCTTTTACTCCTTCTCCTTCTTTTACTTCTAGGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGTACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGCAATTTATGCAACAAACTAGGGGTGATATATGCATTCTGTCTGCATCTGGTTCCATTTCTAATGCCTCTCTTCGTCAACCGGCATCTTCAGGAGGCAACATTACGTATGAGGGTCGGTTTGATGTTATTTCACTTACCGGTTCCTATGTCCGTAATGAAACTGGGGGGCGAAGTGGTGGTCTCAGTGTGTGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTATTGGTGGGCCTCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGTACATTTTCTATCGACAACAAAAAGGATACTAGTGGTGGTGGAAAAGGTGACGCCTCTGCCGGCAAGTTGCCATCACCAGTTGGCGAATCAGCATCAAGTTTAGGTTTCCGCCAAACAGTTGACAGTTCCAGTGGGAATCCAATGCGGGTAAATGATGAACATCAAGCCATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTGCATGTGACACCTCCCAGGTCCACAGACTGGGGAAGTCATCCAGATTCAAGACATACTGGTTATGACCTATCAGGAAGAACAGGTCACGGGTCACACCAGTCTCCTGAAAATGGTGGCTATGACCAAATTCCTGATTGA	1098	0.469	MEPNDNPLSSFFHHHNHQQQQHHHLQQQQQQQPPHGNSTTVASATTTTTTTASPTNGLDGSHILYPSAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTSDNNNNKNTNSFTPSPSFTSRKSHSLSLGNAGQGFSVHVIAVAAGEDVGQKIMQFMQQTRGDICILSASGSISNASLRQPASSGGNITYEGRFDVISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGIGGPLKAAGPVQVIVGTFSIDNKKDTSGGGKGDASAGKLPSPVGESASSLGFRQTVDSSSGNPMRVNDEHQAMGGSHFMIQQLGLHVTPPRSTDWGSHPDSRHTGYDLSGRTGHGSHQSPENGGYDQIPD	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi6g05146	365	MobiDBLite	consensus disorder prediction	322	365	-	-
Vivi6g05146	365	MobiDBLite	consensus disorder prediction	1	15	-	-
Vivi6g05146	365	CDD	DUF296	143	253	IPR005175	-
Vivi6g05146	365	Gene3D	-	142	266	-	-
Vivi6g05146	365	MobiDBLite	consensus disorder prediction	282	301	-	-
Vivi6g05146	365	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	21	292	IPR039605	GO:0003680
Vivi6g05146	365	Pfam	Plants and Prokaryotes Conserved (PCC) domain	143	254	IPR005175	-
Vivi6g05146	365	MobiDBLite	consensus disorder prediction	22	68	-	-
Vivi6g05146	365	MobiDBLite	consensus disorder prediction	1	132	-	-
Vivi6g05146	365	SUPERFAMILY	AF0104/ALDC/Ptd012-like	140	253	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g05146	Vivi-Chr6	155614453	155618962	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g05146	39	365	AT-hook Motif Nuclear Localized (AHL) Family	AT3G04590	49.591	1.80e-86	265

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g05146	-		-	gmx:100809675	466.848

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi6g05146	6	155614453	155618962	Vivi6g05146	6	155614453	155618962	ECH

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