Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05145 ATGGAATTAGGGTTTTCTTCATCTTCTTCTTTGTTGTTGTTGTTACTGTTATTGATTTGTAATTCTCTTGTGATATGTGTTTATGGTGAATATATACATTGCAACTGTGATGATGATAATGATGATGGAATTTGGAGTGTACAGAGTATTTTAGTTTGTCAAAAAGTCAGTGATTTTTTCATTGCTATTGCATATTTTTCAATTCCTCTTGAGCTTCTTTACTTTGTTAGTTACTCCAATGTTCCATTTAAATTGGTGTTTCTTCAATTTGTTGCTTTCATTGTTCTATGTGGTTTGACACATTTGCTCAATGCTTATACTTACTATGGCCCTCATTCCTTTCAATTGTTTCTGTCTCTTACTGTTGCGAAATTCTTCACTGCTCTTGTTTCGTGTGCGACTGCGATTACTTTTCCGACTTTGATTCCGCTTCTTTTGAAGATTAAGGTGAGGGAGTTGTTTTTGAGGCAGAATGTGTTGGAGTTGGGGCAGGAGGTTGGGATTATGAAGAAACAGAAGGAGGCTAGTTGGCATGTTAGGATGTTGACGAGGGAGATTAGGAAGTCGTTGGATAAGCATACGATATTGTATACTACGCTGGTTGAGCTTTCTAAGGCTTTGGATTTGCATAATTGTGCGGTTTGGATGCCGGATGAGGATATCAGGGTGATGCATTTGACTCATGAGTTGAAGCCGAATCCGGGGAGGAATTTTCATAGTTCGATTTCTGTCAATGATTTAGATGTGTTGGAGATAAGAAAGAGCAAGAGGGTATTGGTTTTGAGGCTTGATTCTGAGCTTGGAGCTGCGAGTAGTGGGGGATCTGAGGATTCGGGTGCTGTAGCAGCCATTCGTATGCCGATACTTCATGTTTCGAATTTCAAAGGAGGGACACCGGAGTTTGTCGAGACATCGTATGCTATATTGGTTTTGGTTCTTCCGAAATCAAACTCTAGGGTTTGGACTTCAGATGAGATGGAGATAGTGGAAGTAGTTGCTGATCAGGTGGCTGTGGCTTTGTCTCATGCATCTGTTCTTGAAGAGTCTCAGATCATGAGACAGAAACTTGCGGAGCAAAACCGGGCGTTGCAGCAGGCACAAAAGTACGCGATGATGGCCAGTCAGGCGAGGAGCTCGTTTGAGAAAGTGATGAGTCACGGAATGCGGAGACCTATGCATTCAATCCTGGGATTACTTTCAATGTTTCAAGAGGATAGTATAAGATCCGAACAGAAGATTGTTGTCGACACAATATTGAAAGTTAGCAATTCGCTCTCACGTTTGATAAATGATGTCATGGAGATTTCGGCTAACGACAAAGGAAGTTTCCAGTTAGAGTTGAAACATTTCCATCTACATTCCATGACGAGGGAAGCTTCTTGCATTGCAAAGTGTTTGTGTGTATATAAAGGCTTTGGTCTTGAAATTGATGTGCAGAGGTCTTTGCCTGATTTGGTAATAGGCGATGAGGCAAGGTCGTTTCAAATAATTTTGCACATGATTGGCTATTTATTGAACTTATACGATAGAGGGACTCTCGTTTTTCAAGTTTCTCTTGAAAGTGATACTCGTATGGATATGGATGATAGAAGTTCTGGAATATGGCGATCAAGTATGCAAAATGATAATGTATATATAAAATTTAATTTCCAAATAACCGGTACTGGTTCTCATTCAGACAAATCGATTTTAACTAGTAAGATGCACCGCGGCAATGAACCTAAGGAGGGCTTGAGCTTCAGCATTTGCAAAACACTGGTGCAGATGATGCAAGGTAATATCTGGATATCACCAAACTCTCAGGGTTTGGCACAAGGCATAACACTTGTTCTCAAGTTTCAATTAGGATCATCGCATGGAAGATCCGTTCTTGCTAATAAAGAATTTTCAAACCAACAGCTTAGAGGGCTTAACGTTATTTTAGCCGATGATGATAATGTAAACAGGACTGTAACTAAGAAGCTACTTGAGAAGCTTGGTTGTCAAGTAACCGCTGTTTCATCGGGTTTTGATTGTTTAGCTGCTATAACTGCCTCCAGTATGTCATTCAAAATCATCCTATTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGGAAGATTAGAAAGTTCCAAAGCCGAAATTGGCCTTTGATTATTGCTCTTACAGCAAGTGCAGAAGAACGCATAAAGGAGAGATGCCTACAGGTGGGAATGAATGGATTGATTCGAAAACCTATCATCCTTCATGAGATAGCTGAAGAAATTAGAACAGTTTTGTTACGCGCAGGTGAAAGATTCTAA 2292 0.4005 MELGFSSSSSLLLLLLLLICNSLVICVYGEYIHCNCDDDNDDGIWSVQSILVCQKVSDFFIAIAYFSIPLELLYFVSYSNVPFKLVFLQFVAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFFTALVSCATAITFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDEDIRVMHLTHELKPNPGRNFHSSISVNDLDVLEIRKSKRVLVLRLDSELGAASSGGSEDSGAVAAIRMPILHVSNFKGGTPEFVETSYAILVLVLPKSNSRVWTSDEMEIVEVVADQVAVALSHASVLEESQIMRQKLAEQNRALQQAQKYAMMASQARSSFEKVMSHGMRRPMHSILGLLSMFQEDSIRSEQKIVVDTILKVSNSLSRLINDVMEISANDKGSFQLELKHFHLHSMTREASCIAKCLCVYKGFGLEIDVQRSLPDLVIGDEARSFQIILHMIGYLLNLYDRGTLVFQVSLESDTRMDMDDRSSGIWRSSMQNDNVYIKFNFQITGTGSHSDKSILTSKMHRGNEPKEGLSFSICKTLVQMMQGNIWISPNSQGLAQGITLVLKFQLGSSHGRSVLANKEFSNQQLRGLNVILADDDNVNRTVTKKLLEKLGCQVTAVSSGFDCLAAITASSMSFKIILLDLHMPEMDGFEVARKIRKFQSRNWPLIIALTASAEERIKERCLQVGMNGLIRKPIILHEIAEEIRTVLLRAGERF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05145 763 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Vivi6g05145 763 SMART REC_2 637 752 IPR001789 GO:0000160
Vivi6g05145 763 SUPERFAMILY GAF domain-like 194 343 - -
Vivi6g05145 763 Coils Coil 346 366 - -
Vivi6g05145 763 SMART HisKA_10 376 441 IPR003661 GO:0000155|GO:0007165
Vivi6g05145 763 ProSiteProfiles Histidine kinase domain profile. 383 617 IPR005467 -
Vivi6g05145 763 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 361 441 IPR036097 GO:0000155|GO:0007165
Vivi6g05145 763 FunFam Ethylene receptor 635 759 - -
Vivi6g05145 763 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 445 600 IPR036890 -
Vivi6g05145 763 Gene3D - 440 618 IPR036890 -
Vivi6g05145 763 Gene3D - 175 340 IPR029016 -
Vivi6g05145 763 CDD HATPase_ETR2_ERS2-EIN4-like 482 611 - -
Vivi6g05145 763 CDD REC_ETR-like 637 752 - -
Vivi6g05145 763 SMART gaf_1 191 350 IPR003018 GO:0005515
Vivi6g05145 763 SUPERFAMILY CheY-like 634 756 IPR011006 -
Vivi6g05145 763 Pfam GAF domain 193 340 IPR003018 GO:0005515
Vivi6g05145 763 PIRSF Ethylen_sen_hybr_HK 7 762 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vivi6g05145 763 Gene3D - 619 756 - -
Vivi6g05145 763 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 31 758 - -
Vivi6g05145 763 FunFam Ethylene receptor 4 343 437 - -
Vivi6g05145 763 Gene3D - 341 439 - -
Vivi6g05145 763 Pfam Response regulator receiver domain 639 752 IPR001789 GO:0000160
Vivi6g05145 763 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Vivi6g05145 763 ProSiteProfiles Response regulatory domain profile. 638 756 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05145 Vivi-Chr6 155599219 155602446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05145 30 761 Miscellaneous Gene Families AT3G04580 62.166 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi6g05145 GAF 1.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05145 K14509 - gmx:100805023 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05145 6 155599219 155602446 Vivi1g06302 1 142384866 142388983 ECH
Vivi6g05145 6 155599219 155602446 Vivi6g05145 6 155599219 155602446 ECH