Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05144 ATGTCGAAGAATCCGAAGGTTTTCTTTGATATTCTTATTGGAAAAAATAAAGCTGGGAGGGTAGTAATGGAACTTTTTGCCGATGCTGTTCCCAAAACAGCTGAGAATTTCAGAGCCCTCTGCACTGGTGAAAAGGGAATTGGACAATTAGGGAAGCCTCTACATTTCAAAGGATCTGGTTTTCATAGGATAATTCCTGATTTTATGTGTCAGGGAGGTGATTTTACGAGAGGGAATGGGACTGGTGGAGAGTCTATTTATGGGTCTAAGTTTGCAGATGAGAATTTCAATTTGAAGCATACTGGACCTGGGATTCTTTCCATGGCGAATTCTGGACCTAATACTAATGGTTCACAGTTCTTTATTTGTACTAGTAAGACTCAGTGGCTTGATGGAAAGCATGTTGTGTTTGGTAAAGTTGTTGATGGGTATAGTGTGGTTCAGGAGATGGAGAAGGTTGGTTCACAAAATGGTAGGACTTCGGAACCTGTTGTAATTGAAGATTCTGGAGAAGTTAAGAACTGA 525 0.4038 MSKNPKVFFDILIGKNKAGRVVMELFADAVPKTAENFRALCTGEKGIGQLGKPLHFKGSGFHRIIPDFMCQGGDFTRGNGTGGESIYGSKFADENFNLKHTGPGILSMANSGPNTNGSQFFICTSKTQWLDGKHVVFGKVVDGYSVVQEMEKVGSQNGRTSEPVVIEDSGEVKN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05144 174 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 171 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 169 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Vivi6g05144 174 SUPERFAMILY Cyclophilin-like 3 172 IPR029000 -
Vivi6g05144 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 171 - -
Vivi6g05144 174 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Vivi6g05144 174 CDD cyclophilin_ABH_like 5 170 - -
Vivi6g05144 174 PIRSF Peptidylpro_ismrse 1 174 IPR024936 GO:0003755
Vivi6g05144 174 Gene3D - 1 174 IPR029000 -
Vivi6g05144 174 FunFam Peptidyl-prolyl cis-trans isomerase 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05144 Vivi-Chr6 155591034 155592583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05144 19 153 U-box Gene Family AT5G67530 48.529 8.75e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05144 K01802 - gmx:100306275 315.849