Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05134 ATGGCCAAGAGGCTATGTTGTGAAAGCATGGGAATGAGGAAAGGACCATGGAGTGCTGAAGAAGATCATATACTCATTTCTCATATTCAAACACATGGCCATGCAAACTGGCGCGCCCTTCCTAAACAAGCCGGATTGCTAAGATGTGGTAAGAGTTGTAGGCTTCGTTGGATAAACTATTTGAGACCAGATATCAAAGGAGGAAAATTCAGCGAGGAAGAACAAGATTCCATCTTAAAGCTACATCAAATTCTTGGAAATAAATGGTCTACTATTGCAGCAAGATTACCAGGAAGAACGGATAATGAAGTAAAGAATTTTTGGAATACACATTTGAAGAAAAGGGTTCAAAATGCCAATATTTCTAACTATTCATATACTACTTTGCAAGAGGCACAGGCAAGTGACGGTTCTAGTAGTTTAGCCTCAAATAAGGATCCATCTATTGTTTCTTGTGATACTAATTTAGAACAAAGTATGGGAAATCATGGTTCATGTCAGATAAGTGAAGAAATGGAGTTTTGGTATAATGTATTCATCAAATCAGGATAG 552 0.375 MAKRLCCESMGMRKGPWSAEEDHILISHIQTHGHANWRALPKQAGLLRCGKSCRLRWINYLRPDIKGGKFSEEEQDSILKLHQILGNKWSTIAARLPGRTDNEVKNFWNTHLKKRVQNANISNYSYTTLQEAQASDGSSSLASNKDPSIVSCDTNLEQSMGNHGSCQISEEMEFWYNVFIKSG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05134 183 CDD SANT 69 112 IPR001005 -
Vivi6g05134 183 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi6g05134 183 CDD SANT 16 61 IPR001005 -
Vivi6g05134 183 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vivi6g05134 183 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi6g05134 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi6g05134 183 FunFam MYB-related transcription factor 13 66 - -
Vivi6g05134 183 Gene3D - 68 140 - -
Vivi6g05134 183 Gene3D - 14 66 - -
Vivi6g05134 183 SMART sant 13 63 IPR001005 -
Vivi6g05134 183 SMART sant 66 114 IPR001005 -
Vivi6g05134 183 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 146 - -
Vivi6g05134 183 FunFam MYB transcription factor 69 116 - -
Vivi6g05134 183 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vivi6g05134 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi6g05134 183 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05134 Vivi-Chr6 155430733 155431834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05134 1 180 MYB Transcription Factor Family AT1G06180 53.684 1.41e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g05134 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05134 K09422 - gmx:102663040 256.144