Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05124 ATGAGGATTATGATTAAGGGAGGTGTTTGGAAAAACACCGAGGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCGTATATCTTCGTTGCTTGTTCGTAAATCTGCGAAACAGTGTAAAGCTCGTTGGTACGAGTGGTTAGATCCTTCCATTAAGAAGACTGAATGGACTAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACTATTGCTCCCATTGTTGGTCGAACTCCTTCGCAGTGTTTAGAACGATATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGATAATTATGAACCTGGGGATGATCCTAGGAAATTGCGTCCGGGGGAGATTGATCCGAATCCTGAGTCGAAGCCTGCACGACCTGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGTGCTCGGTTGGCTAACACGAAAGGTAAGAAAGCGAAGAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCTTTGCAGAAGAAACGAGAATTGAAGGCTGCTGGAATTGATATCAGGCAGAGGAGAAGGAAAAGGAGAGGAATTGACTATAATGCAGAAATTCCCTTTGAGAAGAGGCCTCCTCCGGGTTACTTTGATGTTGCTGATGAGGATAGGCCGGTGGAGCAGCCTGCGTTTCCTACTACTATTGAAGAACTCGAGGGAAAAAGAAGGGTTGACGTGGAGGCGCAGCTGAGGAAACAAGATGTTGCGAGGAATAAAATTGCAGAGAGGCAAGATGCCCCAGCTGCTATTCTTCACGCCAACAAGCTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCTAGTGACCTTATGAGCAGCGAAGAACTCACCGAAGGCAGCAGTGCTACGCGTGCTCTTCTCTCTAATTATCCACAGACACCCAACCAAGCAATGACTCCTTTAAGAACTCCTCAGAGAACACCGGCTAGTAAAAGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTCAGGGAGTCTCAGACACCATTGTTGGGAGGAGACAACCCGGAGTTGCATCCTTCTGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACACTCCAAACCCACTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCGAGAAGTGGTATGACACCGGCAAGGGATGGTTATTCTTTTGGCATGACTCCGAAGGGAACTCCTCTAAGGGACGAGCTACATATCAATGAAGGTATGGAGATGCACGACAGTGCTAAACTCGAGCTACGGAGACAAGCTGATATGAAAAGAAGTTTGCGCTCTGGTTTAAGCGGCCTTCCACAGCCCAAAAACGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCCGATAGAATGGCTAGAGAGAAGGCGGAAGAAGAGGCACGACTGCAGGCATTACTTAGAAAACGTTCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTCTGGAGCTTATTAGAAACTCCTTGATAAGAGCTGACGGGGACAAGAGTTCATTTGTTCCACCAACCCCGATTGAGCAAGCAGATGAGATGATAAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCCAAGTATCCTCTTGAGGAGATAGCTAATAAGGAGAGAAAGAAAGGAACCAAACGAGCAGCAAATGGGCCTGCTATCCCTGTCATAGAAGATTTTCAGGAGGATGAGATCAAAACTGCTGATATGTTGATAAAAGATGAAGCCCAGTATCTCCGTGCGGCAATGGGGCATGAAAATGACTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCATTAATGATTTAATGTACTTCTCCACCCGTAATGCCTATGGTCTATCAAGTGTTGCGGGAAATATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGGAGTAAGTTGGATGATGGTAAGGAGAAAATGATTCGACTTGAGAAGAAGGTTACAGTACTCACACAAGGGTATGAGATGAGGTCAAAAAAAAGTCTTTGGCCGCAAATCGAGGCCACTTTCAAGCAGATGAACGTCGCTGCAACAGAATTCGAGTGCTTTCAGGCTTTAAAAAAGCAGGAGCAGTTAGCTGCATCACATAGGATAAACAATCTTTCGTCTGAAGTTCAGAAGCAAAAGGAACTTGAGAGAACTTTGCAGAAGAGATATGGAGATCTTATGGCAGAGCTGGAAAAGACACAAAATGTAATGGAACAATTCAGGGTACAAGCACAGCAGAAGGAAGAAATTGAAGCAAAGAAACAAGCATTAGAAGAGGTACAAATTCAGCAGAAAGAAGAAATTGAAGCAAAAAATCAACCAATAGAAGAGGTACAAGCACTACAGCAAGAAGAAACCGAAGCAAAGAATCATGTACTCGAGAGTACTGAAGCTACAGCTGATGAAATTAGTGTGGAGGGTACAGAAAATTCTGAAGCAGCGCCTCACTCAGCTGACCAGCAATTAGCCGCCGTGCAAGATCAGGCTACTTCTAGCTCCAAAATTGACATGGATGTGGATTCTAGTGAAGCACAAGTGACGCACAGCACCGTTGTTACATTGCCAGATGCACCCGCTGCAGAAGATGAGAGTGCAGAAGTTGTAGAAGGCAAAAACATTGGAAGTGATGTTAACAGAGAGATAACGGTTGATATGAGTGCTGCAGTTGAAATAAAAAGTAATGAGGGAAATGTGGAGGGTCAAGATGTTGAGAACCCAGACGAGGTTATAGAAACTACAAACCAACCTGATAGTAGCATAAAAGAAACTACACTGCTTGAGGGCATGCAAGTTGCTGATGGTAAAGAAGATTAA 3012 0.4472 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRPVEQPAFPTTIEELEGKRRVDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLMSSEELTEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKRDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMTPARDGYSFGMTPKGTPLRDELHINEGMEMHDSAKLELRRQADMKRSLRSGLSGLPQPKNEYQIVMQPVQEDAEEPEEKIEEDMSDRMAREKAEEEARLQALLRKRSKVLQRELPRPPPASLELIRNSLIRADGDKSSFVPPTPIEQADEMIRKELLTLLEHDNAKYPLEEIANKERKKGTKRAANGPAIPVIEDFQEDEIKTADMLIKDEAQYLRAAMGHENDSLDEFVEAHTTCINDLMYFSTRNAYGLSSVAGNMEKLAALQNEFENVRSKLDDGKEKMIRLEKKVTVLTQGYEMRSKKSLWPQIEATFKQMNVAATEFECFQALKKQEQLAASHRINNLSSEVQKQKELERTLQKRYGDLMAELEKTQNVMEQFRVQAQQKEEIEAKKQALEEVQIQQKEEIEAKNQPIEEVQALQQEETEAKNHVLESTEATADEISVEGTENSEAAPHSADQQLAAVQDQATSSSKIDMDVDSSEAQVTHSTVVTLPDAPAAEDESAEVVEGKNIGSDVNREITVDMSAAVEIKSNEGNVEGQDVENPDEVIETTNQPDSSIKETTLLEGMQVADGKED 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 973 991 - -
Vivi6g05124 1003 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 338 358 - -
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 893 912 - -
Vivi6g05124 1003 Coils Coil 167 187 - -
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 960 1003 - -
Vivi6g05124 1003 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Vivi6g05124 1003 SMART sant 58 105 IPR001005 -
Vivi6g05124 1003 SMART sant 6 55 IPR001005 -
Vivi6g05124 1003 Coils Coil 513 540 - -
Vivi6g05124 1003 Coils Coil 796 839 - -
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 338 355 - -
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 409 423 - -
Vivi6g05124 1003 Gene3D - 5 58 - -
Vivi6g05124 1003 FunFam CDC5 cell division cycle 5-like 5 59 - -
Vivi6g05124 1003 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Vivi6g05124 1003 FunFam CDC5 cell division cycle 5-like 60 120 - -
Vivi6g05124 1003 CDD SANT_CDC5_II 55 106 IPR047240 -
Vivi6g05124 1003 Gene3D - 59 114 - -
Vivi6g05124 1003 Coils Coil 768 788 - -
Vivi6g05124 1003 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 110 150 - -
Vivi6g05124 1003 MobiDBLite consensus disorder prediction 398 425 - -
Vivi6g05124 1003 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Vivi6g05124 1003 Coils Coil 689 716 - -
Vivi6g05124 1003 CDD SANT 10 53 IPR001005 -
Vivi6g05124 1003 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Vivi6g05124 1003 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Vivi6g05124 1003 Pfam Myb-like DNA-binding domain 10 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05124 Vivi-Chr6 155383702 155391760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05124 1 833 MYB-Related Transcription Factor Family AT1G09770 75.000 0.0 1236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g05124 Myb_Cef 3.5e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05124 K12860 - gmx:100790369 1431