Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05123 ATGCATTCTTCATCTTCATCTGTTTTTCCCACTCATATGGAAAGCACGTATATGAAACCCTCGGATTCGTTTCATCGTTCACCTGTCGGGGGTTTGACTGCAAATCATGCCTTGCTGCAAGCTACACCATCAAATCCGATCAGAAGTGATAGACAGGTGTTTTCGGCTTCGCCCACTGCTGAATGTCCTGGCGGCATCGCCTTTTCTTCCGACTCACAGCATGATAGGCAATATCAAGATTCTCCGTTCACTTCTCAGACGTTAGGTGACGACGTGTCTTCGGAAATCCACTCAACGACATTCACTTCTCATCCGCAAGAAAATGATGAAATTTCATGGGGGCCGGATCCGATGCAGGATATTATTTGTTTTCCTGAAATTTTTTCTAGCCAGCATGATCAGGTGGAAAACAGTGCCTCTTACATGAACGACGGCAATGTCAAAAAATCTGATTTCGGGGAGTGGGTTGACCAGCTAATGACGATTGATGATACTCCTCATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGCCGAACCAACACCAAAGGCAACACAGGTTTCTCTGAAGCACCATACACCGTCTCGAGAAGTTAATGATCTTTGTAATTCAGCTTCAGCATCGACTGCACCTCAAACTAAGCCTAGAATGCGATGGAGTCCAGAACTTCACGAGGCCTTCGTGGAAGCAGTTAACCAGCTTGGTGGTAGTGAGAAGGCCACTCCAAAAGGTGTCTTGAATCTGATGAATGTTGACGGCCTTACCATCTACCATGTGAAAAGCCACCTGCAGAAGTATAGAACTGCCCGATACAAACCTGAGTCACCAGAAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATCACCGAAGCATTACGGTTGCAGATGGACCTCCAGAAACGGCTTCACGAACAACTTGAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTCAAATGATGTTTGAGAAACAGAAACAGATAGGTGGCAGCAAGGGCTCGCCCCCTTCTAACGCGCCTTCTGCTGCACTCTTGGACACGGCGGTACCCTCTTCTGCAGACAAATTAAAAACGTCAAATGATGAATGCGGATTAAAATGCAACACCGAAGAAAGTTCCCAGGATGCAACACGTGAAGCTGAAGTTACCGAAGAACATGAGAGGACAGATGATCAGCTATCTGCAGTACCTCCGATGAAACGGGCGAAGATTCAATGA 1278 0.4538 MHSSSSSVFPTHMESTYMKPSDSFHRSPVGGLTANHALLQATPSNPIRSDRQVFSASPTAECPGGIAFSSDSQHDRQYQDSPFTSQTLGDDVSSEIHSTTFTSHPQENDEISWGPDPMQDIICFPEIFSSQHDQVENSASYMNDGNVKKSDFGEWVDQLMTIDDTPHPNWSQLLGDDNVAEPTPKATQVSLKHHTPSREVNDLCNSASASTAPQTKPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVDGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMDLQKRLHEQLEIQRKLQIQIENQGKHLQMMFEKQKQIGGSKGSPPSNAPSAALLDTAVPSSADKLKTSNDECGLKCNTEESSQDATREAEVTEEHERTDDQLSAVPPMKRAKIQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05123 425 Gene3D - 215 274 - -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 270 291 - -
Vivi6g05123 425 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Vivi6g05123 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 273 IPR017930 -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 392 414 - -
Vivi6g05123 425 Pfam MYB-CC type transfactor, LHEQLE motif 303 347 IPR025756 -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 372 391 - -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 350 365 - -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 346 425 - -
Vivi6g05123 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 270 IPR006447 GO:0003677
Vivi6g05123 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 207 394 IPR044848 GO:0003700
Vivi6g05123 425 FunFam Myb family transcription factor 215 273 - -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 44 90 - -
Vivi6g05123 425 MobiDBLite consensus disorder prediction 70 90 - -
Vivi6g05123 425 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05123 Vivi-Chr6 155369693 155372756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05123 95 352 G2-like Transcription Factor Family AT3G04450 51.273 1.94e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi6g05123 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05123 - - mtr:25499705 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05123 6 155369693 155372756 Vivi6g05123 6 155369693 155372756 ECH
Vivi6g05123 6 155369693 155372756 Vivi1g05829 1 128576164 128579261 PCT