Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05089 ATGGTTGTGAAAGTGAAAAGAGAAACTCTTGAAGCATGCATGACATGCCCTATTTGTCTTAAGCTCTTGAAAGATGCTACCACTATATCCCTTTGTCTTCACACTTTTTGCAGGAAGTGTATATATGACAAGCTTTCCGATGAAGAGAGCGATTGTTGTCCCGTATGCAACATTGATCTCGGTATTCTTCCTGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCATTTAAACGAAAGAAGGTTGAGGCCGAAGAAGTTGTTCCCTCAATACCCCTACCAGCAAAAAGGAAGGAAAGATCTCTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATACAGGCTTTACAGGAAAGAGAACAAAAACTGGTACGAGAAAGGCTGCTACTTTACGTGGATGCAGTTTTATCCCCGAAGGTTCTGTAAAGAAAGAAGAAACACATGACGAAGATATTCTGGGTTCTTTCTTAGCTGAGACTTCTAAGAAGCATAGACCTAATGAAGATACAAACAACAATATGGACCTTACTGAAGGAAAGGCTGATCTCTGGACGCCCTTGAACTGTCTCGTTGAAGCGGCCAATAGAACAAAGTCCTCAAGGTCAAATTTACAAGGGACTCCTCTTGCCAAATTAGAGTCCCCGGTTACTCCTCACGGTGGATTAGTGATGTCTGAAGTTACCAAAGCAGAGCCACCTACATCTGTTCAGGGTGAATTACACATGCCTAAAACCAAGAACAAGAGCAATGGACATAAAACAAAGTTTGGAGATGACAAGGATGGAAACACCTTGCCTTCAGGACCCGTGAAGCGAAAAAGGATGCGTCCTGCTAATCAGAAGAGAACAGCAGCATCTGAGATGTCTGCCTCAGCACAACTCGTGTTAGATGCAACAGGGAGCAGGTGCAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCTGAAGACCAGAATGGAGAAATTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAAGATGGTAGTGTGCCAGTCTCGTTTATTCAAAAGTACCTCATGAAGAAACTTAATCTTGCTAGTGAAGCAGAGGTGGAAATAATATGTCGGGGTCAACCCGTTCTCCCATCTTTGCAAATGCATAACTTAGTAGATCTGTGGTTCTGCACAGCGTCAACATCGAAAAAGCTTCCGGCATCTGTAGGATCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCATACCTCTTTGA 1284 0.4268 MVVKVKRETLEACMTCPICLKLLKDATTISLCLHTFCRKCIYDKLSDEESDCCPVCNIDLGILPVEKLRPDHNLQDIRTKIFPFKRKKVEAEEVVPSIPLPAKRKERSLSSLVVSAPKVSTHTGFTGKRTKTGTRKAATLRGCSFIPEGSVKKEETHDEDILGSFLAETSKKHRPNEDTNNNMDLTEGKADLWTPLNCLVEAANRTKSSRSNLQGTPLAKLESPVTPHGGLVMSEVTKAEPPTSVQGELHMPKTKNKSNGHKTKFGDDKDGNTLPSGPVKRKRMRPANQKRTAASEMSASAQLVLDATGSRCNRKNSPIWFTLVASEDQNGEISLPQISACYLRIKDGSVPVSFIQKYLMKKLNLASEAEVEIICRGQPVLPSLQMHNLVDLWFCTASTSKKLPASVGSSAKDFVMALSYCRKTIPL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05089 427 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Vivi6g05089 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 106 IPR013083 -
Vivi6g05089 427 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Vivi6g05089 427 MobiDBLite consensus disorder prediction 206 296 - -
Vivi6g05089 427 SUPERFAMILY RING/U-box 9 80 - -
Vivi6g05089 427 CDD RING-HC_PCGF 14 57 - -
Vivi6g05089 427 Gene3D - 297 404 - -
Vivi6g05089 427 SMART ring_2 16 56 IPR001841 -
Vivi6g05089 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 423 IPR044807 GO:0004842
Vivi6g05089 427 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05089 Vivi-Chr6 155133955 155138233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05089 1 346 C3H Transcription Factor Family AT2G30580 46.832 1.45e-84 260