Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05084 ATGGAAAGAGTGTTTTCAATTGCAGAAATCACTGAACAATATTGGTTAACATCTAAGGCTTGTAAAGAAGGAGAATCAAAGATGAATAGAAGTGATTCTGAATGGGCTTTTCAACAGTTTCTTCAGCAACAAGAACAAGAAGCTGCTGCTAATACTTCTCATGCAAAGCCTTGTTCTTCTTCAACTTCAACTTCTTCTTCCAACGTTGATCTCAAACTCAATATCAATAACAATAATAACAATAATAATAATATCAATAATTCAGAAGATTACCAAGCTTTTCTCAAAACCAAACTTGAACTCGCCTGCGCCGCATTCGCCATGTCTCGGGGATCTTTGGTGAAATCTCAGGAACCTGACAATGGATCACATGCACCTGATGCTTCTGAACATGGACCTATTCCTGCTTTAAAAGGTTTGCAGAATAAAGATGTGCAGAAGAAGCCTGTTGTTTCAATCAGGTCAACAACAAGTGGTTCATCAGATGATGAGGAAGCTGAGGGAGAGATTAATATGAATGGTGACACGAATCCTTCTGATGCAAAAAGAGTAAGAAGGATGCTTTCTAATAGGGAGTCTGCTAGACGTTCGAGACGAAGAAAGCAAGCTCATTTATCTGAGCTTGAAACACAGGTCTCTCAATTAAGAGGTGAAAACACTTCACTGTCTAAGAGTTTAACAGATGTGTCTCAAAAATACAATGATTCTGCTGTTGACAACAGAATATTAAAAGCTGATGTTGAAAGATTGAGGGCACAGGTGAAGATGGCTGAAGAGACGGTTAAAAGATTTACCGGATTGAATCCAATGATGTTTAATGAAATGTCTGAGATATCAACAATGGGAATGGGAATGTCATTATTTGATGGAAGCCCTTCTGAGTCATCAGCTGATGCATCTGTGCCTGAAGGTTCAAATAATCACTTTTGTCAACCAGCTTCTAGTAATCTTATGCCTGCAAGTCATAATATAAGAGGAGTCAATAATGGATTGGGAGGCATTGTTTCTTCAGCTGAAAGTATGCAGAAGAACACTGCAGCAGGGAACAAGATAGGCCGAACAAACTCCTTGCCGCGAGTGGCTAGCTTGGAACATCTTCAGAATCGGATTCGCGGTGGTGCTGATGAAGAGAAGTGA 1137 0.3967 MERVFSIAEITEQYWLTSKACKEGESKMNRSDSEWAFQQFLQQQEQEAAANTSHAKPCSSSTSTSSSNVDLKLNINNNNNNNNNINNSEDYQAFLKTKLELACAAFAMSRGSLVKSQEPDNGSHAPDASEHGPIPALKGLQNKDVQKKPVVSIRSTTSGSSDDEEAEGEINMNGDTNPSDAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENTSLSKSLTDVSQKYNDSAVDNRILKADVERLRAQVKMAEETVKRFTGLNPMMFNEMSEISTMGMGMSLFDGSPSESSADASVPEGSNNHFCQPASSNLMPASHNIRGVNNGLGGIVSSAESMQKNTAAGNKIGRTNSLPRVASLEHLQNRIRGGADEEK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05084 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Vivi6g05084 378 SUPERFAMILY Leucine zipper domain 182 232 IPR046347 GO:0003700|GO:0006355
Vivi6g05084 378 FunFam BZIP transcription factor 180 231 - -
Vivi6g05084 378 Pfam Basic leucine-zipper C terminal 250 374 IPR020983 -
Vivi6g05084 378 MobiDBLite consensus disorder prediction 114 207 - -
Vivi6g05084 378 PANTHER BASIC LEUCINE ZIPPER 63 1 373 - -
Vivi6g05084 378 SMART brlzneu 178 242 IPR004827 GO:0003700|GO:0006355
Vivi6g05084 378 MobiDBLite consensus disorder prediction 46 84 - -
Vivi6g05084 378 Pfam bZIP transcription factor 181 232 IPR004827 GO:0003700|GO:0006355
Vivi6g05084 378 Coils Coil 191 225 - -
Vivi6g05084 378 Coils Coil 240 267 - -
Vivi6g05084 378 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 234 IPR004827 GO:0003700|GO:0006355
Vivi6g05084 378 Gene3D - 181 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05084 Vivi-Chr6 155081602 155083868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05084 1 272 bZIP Transcription Factor Family AT4G02640 36.656 1.41e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi6g05084 bZIP_C 4.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05084 K25784 - gmx:778137 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05084 6 155081602 155083868 Vivi6g05084 6 155081602 155083868 ECH
Vivi6g05084 6 155081602 155083868 Vivi1g05765 1 127173426 127177577 PCT