Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05069 ATGGTTCCATCACTCTGTGTCAATGGTTGTGGTTTTTATGGTTCTTCTTCAAACAAGAACCTCTGTTCAAAGTGTTACAATGATTATCTCAAAAAAAATATTGAGAAGTCAAATGACGAAAGCTTTGTTTTTGAATCATCTTCTTCTTCTTCTTCAGTGACCCCTAATATTGATAGTATTTGTGAGCTTGTGGCAGCTACTTCTCTTACCGATAATCAAAGCGTTAAGACAAAGAAAAATAGGTGCGAGAGTTGCAACAAAAAAGTGGGATTATTAGGGTTTAATTGTCGTTGTGGAAATGTATTTTGTAAAATGCATAGATATCCTGAAGAACATGCATGCAAGGTAGATTTAAAGGAGATTGGTCGTCAAATATTAAATAAACAAAATCCTTTATGTGTGAGTGATAAGTTAGAACACCGAATTTAG 429 0.338 MVPSLCVNGCGFYGSSSNKNLCSKCYNDYLKKNIEKSNDESFVFESSSSSSSVTPNIDSICELVAATSLTDNQSVKTKKNRCESCNKKVGLLGFNCRCGNVFCKMHRYPEEHACKVDLKEIGRQILNKQNPLCVSDKLEHRI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05069 142 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 52 - -
Vivi6g05069 142 SUPERFAMILY AN1-like Zinc finger 70 136 IPR035896 -
Vivi6g05069 142 Gene3D - 1 56 - -
Vivi6g05069 142 Pfam AN1-like Zinc finger 82 116 IPR000058 GO:0008270
Vivi6g05069 142 Gene3D - 59 136 IPR035896 -
Vivi6g05069 142 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Vivi6g05069 142 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Vivi6g05069 142 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 139 - -
Vivi6g05069 142 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Vivi6g05069 142 FunFam Zinc finger AN1-type containing 6 58 137 - -
Vivi6g05069 142 ProSiteProfiles Zinc finger AN1-type profile. 76 122 IPR000058 GO:0008270
Vivi6g05069 142 SMART AN1_Zf_4 82 119 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05069 Vivi-Chr6 154947585 154948013 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05069 5 139 C2H2 Transcription Factor Family AT3G52800 41.558 2.62e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05069 - - tpra:123902604 199.134