Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05066 ATGGTTCCATCACTCTGCATCAATGGCTGTGGTTTCTATGGTTCTTCTTCAAACAACAACTTATGTTCTAAGTGTTACAATGATTATCTCAAAGAAAGCACTGAGAAATCAAATGATGAAAGCTTTGAATCGATATTTTCTTCTTCTTCAACGGCCCCTAATACCGATAGTATTTGTGAGGCTATGGCAGCCACTTCTCTTACCGACAATCAAAACATTAAGGCAAAGAAAAATAGGTGCAAGAGTTGCAGTAAAAAAGTGGGACTATTAGGCTTTAAATGTCGCTGTGGAAACGTGTTTTGTAAAATACACAGATATCCAGAAGAACATGAATGTAAGGTGGATTTAAAGGAGATTGAGCGTAAAATATTAAATAAACAGAATCCTTTATGTGTAAGTGATAAGTTAAAACACCGAATTTAG 423 0.3522 MVPSLCINGCGFYGSSSNNNLCSKCYNDYLKESTEKSNDESFESIFSSSSTAPNTDSICEAMAATSLTDNQNIKAKKNRCKSCSKKVGLLGFKCRCGNVFCKIHRYPEEHECKVDLKEIERKILNKQNPLCVSDKLKHRI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05066 140 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Vivi6g05066 140 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Vivi6g05066 140 FunFam Zinc finger AN1-type containing 6 53 135 - -
Vivi6g05066 140 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Vivi6g05066 140 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 43 - -
Vivi6g05066 140 Gene3D - 1 60 - -
Vivi6g05066 140 Gene3D - 64 123 IPR035896 -
Vivi6g05066 140 SMART AN1_Zf_4 80 117 IPR000058 GO:0008270
Vivi6g05066 140 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 137 - -
Vivi6g05066 140 Pfam AN1-like Zinc finger 80 114 IPR000058 GO:0008270
Vivi6g05066 140 ProSiteProfiles Zinc finger AN1-type profile. 74 120 IPR000058 GO:0008270
Vivi6g05066 140 SUPERFAMILY AN1-like Zinc finger 68 134 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05066 Vivi-Chr6 154934440 154934862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05066 5 137 C2H2 Transcription Factor Family AT3G52800 40.260 9.72e-27 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05066 - - tpra:123902604 185.652