Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05060 ATGATCCTGAAGATTCCTTTCCTTAAAATCATTGGCCCCACTCTCTGTTCCTCTTCACATGCCGTTAGTTGCACTATCGTCATCTTCTCAGACTCACTTACTCCATTTATCCATGCTCCCCACGCATTTCTATTATTCTTTCTAGTCATGCATGGTAGAGTAAAGGTGGTAGCAGCAAACATGTTGGATGAAGGAGTATCAAAGCAGTTTCAGTTTCAGCCAATGAGGACTACTACTACTAGTCTTCTTCATGATCCATTCTCACTTCAAACTCAATCTAATAATAATCTCTCCTACCCATCAATATTATCGTCATTGCCTCACCACTCTTCCAAACAACATCACAATCACACCACCACCTTTAGTTCTGCATTCAACTTCCAGATCCAAAATCAATTACCATTGTCACACTTGATCGATTCCGGATGGACTAACGGCGAGCTTCTTGCACTTGTCAATATTAGATCTACTGTTGAAAATTGCTTCCCAGATCACCTCATATGGGATAATGTCTCTAGGAAGCTTGAAGAAGTTGGGATTAAGAAGAGTGCTGACAAGTGCAAGGAGAAGTTTGAAGATGAGAATACATCATTGAAGATCAATAATCATAATGATTTTGCTAGTGAACTTCAAACTCTCTATCAACACGAAGAAAATTCAAGAGATGAGGATAACATCGACATTGTAGTGAGCAAACAATGTGGTTATGATGACAAGGTGGACAGAAATAGAAAGAGGAAGAATCGTCGGCGCGATAGATTTGAAATGATGAAGTGTTTTTGTGAGACCGTGGTAAACAAAATGATGGCACAACAAGAAGAAATACACAATAAGCTAATTCAAGACATGTTCAAAAGAGATCAAGAGAAGCTTGCCAGAGAAGAAGAATGGAAAAAGCAAGAAATAGAAAGGATGAACATGATGACACAAGAACAAGCTATTTCAAATCATAGACAATCCACCATAATTGATTTCTTGAATAAACATCTTTCCACAAATGAAAACAACATTGTCAACAACAAAACTACAAAAGCATGTTCTTCTTCACAATTGCACTCACAAAACGCTAATAATCATGAACCCTCATCAACATCCCCAGATCAAAACCCTAGCTCGAGCGAAACGGCATTACTAGTTCCTTCAACTTCTTCCAACAACATCAATAACAACAATAAGAATCCAGTGTTAGAGGATAAGAGAAGGTGGCCAAGAGATGAAGTGTTGGCACTGATAAACCTCAAGTGTTCTACAACTGTAATAAACAGAAGAAGCAACAAGAATAGTATTGAAAAGAAAAAGGAAGAAAATAAGGGACCTGTGTGGGAGAGAATCTCTGAAGGGATGTCAGAGTTAGGATACAAGAGAAGTGCAAAGAGATGTAAAGAGAAATGGGAAAACATAAACAAGTATTTTAGAAAAACAAAGGATGGCGATGTGAATAAGAGGAAAAGGAGAATGGATTCAAGGACTTGTCCTTATTTTCATCAGCTAAGTTCTTTGTATAATCAGCAGCAGCATGGAAAGGTGATTGCTCCTCAAAAGCAATTAACAGTCAATTCAGTTGGCCAAATTGATGATCAACCTCAAGCTCAAAGTGATTAA 1602 0.3789 MILKIPFLKIIGPTLCSSSHAVSCTIVIFSDSLTPFIHAPHAFLLFFLVMHGRVKVVAANMLDEGVSKQFQFQPMRTTTTSLLHDPFSLQTQSNNNLSYPSILSSLPHHSSKQHHNHTTTFSSAFNFQIQNQLPLSHLIDSGWTNGELLALVNIRSTVENCFPDHLIWDNVSRKLEEVGIKKSADKCKEKFEDENTSLKINNHNDFASELQTLYQHEENSRDEDNIDIVVSKQCGYDDKVDRNRKRKNRRRDRFEMMKCFCETVVNKMMAQQEEIHNKLIQDMFKRDQEKLAREEEWKKQEIERMNMMTQEQAISNHRQSTIIDFLNKHLSTNENNIVNNKTTKACSSSQLHSQNANNHEPSSTSPDQNPSSSETALLVPSTSSNNINNNNKNPVLEDKRRWPRDEVLALINLKCSTTVINRRSNKNSIEKKKEENKGPVWERISEGMSELGYKRSAKRCKEKWENINKYFRKTKDGDVNKRKRRMDSRTCPYFHQLSSLYNQQQHGKVIAPQKQLTVNSVGQIDDQPQAQSD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05060 533 MobiDBLite consensus disorder prediction 344 393 - -
Vivi6g05060 533 MobiDBLite consensus disorder prediction 344 398 - -
Vivi6g05060 533 Pfam Myb/SANT-like DNA-binding domain 400 499 IPR044822 -
Vivi6g05060 533 Pfam Myb/SANT-like DNA-binding domain 142 202 IPR044822 -
Vivi6g05060 533 PANTHER FI21293P1 113 530 - -
Vivi6g05060 533 ProSiteProfiles Myb-like domain profile. 399 468 IPR001005 -
Vivi6g05060 533 CDD GT1 400 475 - -
Vivi6g05060 533 Gene3D - 402 473 - -
Vivi6g05060 533 Gene3D - 143 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05060 Vivi-Chr6 154889649 154892115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05060 254 503 Trihelix Transcription Factor Family AT5G28300 46.520 2.94e-64 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi6g05060 Myb_DNA-bind_4 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05060 - - vvo:131610649 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05060 6 154889649 154892115 Vivi6g05060 6 154889649 154892115 ECH
Vivi6g05060 6 154889649 154892115 Vivi1g05748 1 126452569 126455153 PCT