Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05052 ATGAATGGTGTAACACACCTTGAAACTGATGATGACTCAGATTTTGTTGAAGTTGATCCAACCGGTAGATATGGCAGATACAATGAAATTCTTGGTAAAGGAGCTTCTAAAACAGTATATAGAGGATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAATCAAATCAAACTATATGATTTTCTACAAAATCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTTCTCAAGACATTGAAACACAGAAACATAATGAAATTCTATACTTCTTGGGTTGATACTGCAAATAGGAATATCAACTTTGTTACTGAGTTGTTTACTTCCGGTACTCTTAGACAGTATAGGTTAAAGCACAAGAAGGTTAACATTAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGCAAGGACTTCTGTATCTTCATAGTCATGATCCACCTGTGATTCATAGAGATCTCAAATGTGATAATATTTTCATTAATGGTAATCAAGGGGAAGTTAAGATTGGGGATCTTGGTTTGGCTGCGATTCTCCGGAAATCACATGCTGCTCATTGTGTAGGAACACCTGAGTTCATGGCGCCAGAAGTATATGAAGAGGAGTATAATGAATTAGTTGACATATATTCCTTCGGTATGTGTGTGTTAGAAATGGTCACATTTGAATATCCTTATAGCGAATGCAGCCATCCGGCACAAATCTACAAGAAAGTTTCTTCTGGGAAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCCGAAACGCGAGAGTTTGTTGAGAAATGCCTCGCGACAGTGTCCCTAAGGCTCTCTGCAAGGGAGCTTCTTGACGATCCTTTTCTTCGAATTGATGATTACGAATATAATTTGGGATCGGTAGATGTTGAAGAGTTTGTTGACTTGGGTCCTCTTGTTAGTCAATCATTCTTTTCACTCGATCGTAGCTATAGTAACATAAGTACCGAATACTCAAATGGTTTCGGGTATGAAGCAGATTGTTATTCTCATCCGGCTGAGATTGAACACGGAATTGAACTTTTCGAGTGCCAAGACGATGAAACCTCCAAAGATGTTGACATAAGCATCAAAGGCAAGAGGAAAGACGACGGTGGCATTTTTTTGAGACTAAGAATTGCGGACAAAGAAGGTCGTATCCGAAACATTTATTTCCCGTTTGACATAGAGTTGGATACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTTGACATTACCGATCAAGACGTTACCAGTATAGCCGGTATGATAGATGGAGAAATCGCTTTGTTAGTGCCTAAATGGAGGCGAGGACCGGGAATTGAGGAAACCACTGACTATGCAAATCAAAGTTTCTGTGAGAATTGTGTGTCGAATCATACTACAGTTACGGATTTTCTTTCCCGTAATCAAAGTGGAAAAAACTTGCAGCTTCTTCAATGCTGCATGCATGGATGTGCTTCAATGCACGGCCGTTTCGAAGAGATTACATTCCAATCCGAGGAGTATGACAACAATGTCAACGAGGATGCGCCTAACATGTCAAGCGAATCCGACTTTTTGCAGTATCAGGAATCGTGGAGTCATCATCACGAAAGCCGCGAACTGAGTCCAGTAGAATCTACTACTCGAAGCCCTTCAGACGAACATTACGAACTAGGAAACCATTATTTACCGACTATCGGTTCACTACATTGCGGAGCTGAGAATGATTACGAGAAAGAGATACAACACGAGTTGAGATGGCTCAAAGCAAAATATCAAATGGAGTTAAGGGAACTTAGGGATAAACAAATGGGACTAGAAGCAAAATCGCCGCACTCAAGTAGCAACATAAAGCATGAAACAACATCAGAAACAGTAAACAGATTCGAGAATGAGATTCACTTTGATAATCACAGGGATTACGATTCCAGCTACGGTTTTCGAGAACACAAGAGCCAACCCAATTCGGAGACTCGAAGGGCCCAAAATTGCGGCGCGATGTATTGTGATGAAGAAAGTATTGCTACAGCAAAGAGTTTCTACACAAGGATGTTGATTCCAGATACTATACACAGAACTGTTTCACTTCCTGTTGATGCTGTGGATGTATAA 2100 0.4033 MNGVTHLETDDDSDFVEVDPTGRYGRYNEILGKGASKTVYRGFDEYQGIEVAWNQIKLYDFLQNPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLKHKKVNIRAVKHWCRQILQGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECSHPAQIYKKVSSGKKPDALYKVKDPETREFVEKCLATVSLRLSARELLDDPFLRIDDYEYNLGSVDVEEFVDLGPLVSQSFFSLDRSYSNISTEYSNGFGYEADCYSHPAEIEHGIELFECQDDETSKDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIELDTALSVATEMVAELDITDQDVTSIAGMIDGEIALLVPKWRRGPGIEETTDYANQSFCENCVSNHTTVTDFLSRNQSGKNLQLLQCCMHGCASMHGRFEEITFQSEEYDNNVNEDAPNMSSESDFLQYQESWSHHHESRELSPVESTTRSPSDEHYELGNHYLPTIGSLHCGAENDYEKEIQHELRWLKAKYQMELRELRDKQMGLEAKSPHSSSNIKHETTSETVNRFENEIHFDNHRDYDSSYGFREHKSQPNSETRRAQNCGAMYCDEESIATAKSFYTRMLIPDTIHRTVSLPVDAVDV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05052 699 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 617 - -
Vivi6g05052 699 FunFam probable serine/threonine-protein kinase WNK9 108 287 - -
Vivi6g05052 699 ProSiteProfiles Protein kinase domain profile. 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05052 699 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05052 699 CDD STKc_WNK 23 282 - -
Vivi6g05052 699 Gene3D Phosphorylase Kinase; domain 1 8 106 - -
Vivi6g05052 699 SUPERFAMILY Protein kinase-like (PK-like) 28 283 IPR011009 -
Vivi6g05052 699 Coils Coil 585 605 - -
Vivi6g05052 699 SMART serkin_6 25 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05052 699 Gene3D Transferase(Phosphotransferase) domain 1 108 287 - -
Vivi6g05052 699 Gene3D - 371 456 - -
Vivi6g05052 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vivi6g05052 699 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 427 IPR024678 GO:0004674|GO:0005524
Vivi6g05052 699 FunFam Probable serine/threonine-protein kinase WNK1 10 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05052 Vivi-Chr6 154781141 154784576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05052 1 600 MAP Kinase Kinase Kinase AT3G22420 51.464 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi6g05052 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05052 K08867 - gmx:100775959 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05052 6 154781141 154784576 Vivi6g05052 6 154781141 154784576 ECH
Vivi6g05052 6 154781141 154784576 Vivi1g05740 1 126267517 126270974 PCT