Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05048 ATGGCCTCACAGCAACACGACACCGTTTTCGAAGACATCGACGACGACGAAGACGAATTTCACGAATACGAAGAAGATGAAGAAGACGACGACGTTTTAGTCGACGACGAAGAAACCGATCCTCCTTCCTCTTCCCGCTCCGTCTCCGTCCCTTCCGTCACAGTCGCCGTCCCAGGCTCCGTCATCTCCAACGGCGCTATCCGACCCCCAATTTTAACTCCAACCGCAACCACCATCGTCTTCCCCGCCGATTCCTTCCCCTCCGATTCAAAACGCCAACAACAACTACAACTACAACGTATAGATCAAATTGAAGAGAAAAAACCTCTGGAAGATTCACGCAAACTCTTCCAGCGTCTATGGACCGACGAAGACGAGATGGAACTCTTACAAGGCTTCCTCGACTACACATCTCAAAGAGGCTCTTCTCACCACAACGACACAGCTCAATTCTACGACCAAATCAAATCCAAACTCCAACTCGATTTCAACAAGAATCAACTCGTCGAGAAGATCCGAAGGTTGAAGAAGAAATACCGAAACGTTCTCAACAAAATCAGCTCCGGCAAGGAATTCGTCTTCAAAACCGCTCACGATCAAGCTACTTTCGAAATCTCACGCAAGATCTGGAACAACGTGGCACCAGTTGCTGGTGATATTGCCATAGACGAAGATGAAATCAACCTGAATCCTAGTCCGAACCCTAACCTGAATTTTAGTCCGGTGATTCTCAAGACTGAGGCGAATTCGAACACGAGGAAGCGATCGCGGCCTCGATCTGTTATCAGAACGTTCGAGAAACGCGAATCTATTGAAGCTTCAAATTCAATTAGAGATCGTGATTATCTCAATATCAACCTCAACAATCCTAATCCAAATCCTATTCCAATTCATATTCCTAATCCTAATCCAATTCCTAATCCTTACATCACTGCAACAACTACTGCAACAACTACTGTTAATGCTGCTATAACACCTAATATTACTGCTACTCCTATCCCTACTATAATTAATGCTAATAATTATAGTACTAATTGCAGTAGCATTGGGACTAGTGTAGCAGGTGTGATTGAGGAAACAGTGAGGAGTTGTTTATCACCGTTGTTGAAGGAATTGGTGGCCGGTGCGGGCGGGTCTGCGATGGGAGGATCGGTTGGAGGAGGAAGAGGAGGTTTCGGTGGATTCGCGATGAATCCGTTGCCGTTTCAGTTCATGAATTCAGGTTTCGGAGGCGGAGAAATCATGGATGAGAAATGGAGGAAGCAACAGATTTTGGAATTGGAAGTGTATTCGAAGAGATTGGAATTAGTTCAAGATCAGATCAAAGCATCTCTCGATGAGTTGCGTGGATCTGGAGGATGA 1362 0.4559 MASQQHDTVFEDIDDDEDEFHEYEEDEEDDDVLVDDEETDPPSSSRSVSVPSVTVAVPGSVISNGAIRPPILTPTATTIVFPADSFPSDSKRQQQLQLQRIDQIEEKKPLEDSRKLFQRLWTDEDEMELLQGFLDYTSQRGSSHHNDTAQFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKISSGKEFVFKTAHDQATFEISRKIWNNVAPVAGDIAIDEDEINLNPSPNPNLNFSPVILKTEANSNTRKRSRPRSVIRTFEKRESIEASNSIRDRDYLNINLNNPNPNPIPIHIPNPNPIPNPYITATTTATTTVNAAITPNITATPIPTIINANNYSTNCSSIGTSVAGVIEETVRSCLSPLLKELVAGAGGSAMGGSVGGGRGGFGGFAMNPLPFQFMNSGFGGGEIMDEKWRKQQILELEVYSKRLELVQDQIKASLDELRGSGG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05048 453 MobiDBLite consensus disorder prediction 10 38 - -
Vivi6g05048 453 Coils Coil 165 185 - -
Vivi6g05048 453 PANTHER BNAANNG10740D PROTEIN-RELATED 22 447 IPR007592 GO:0006355
Vivi6g05048 453 Pfam Protein of unknown function, DUF573 117 211 IPR007592 GO:0006355
Vivi6g05048 453 MobiDBLite consensus disorder prediction 1 51 - -
Vivi6g05048 453 Coils Coil 427 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05048 Vivi-Chr6 154745742 154747614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05048 1 449 GeBP Transcription Factor Family AT5G28040 39.662 5.49e-86 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vivi6g05048 DUF573 6.7e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05048 - - psat:127132285 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05048 6 154745742 154747614 Vivi1g05737 1 126195412 126196458 PCT