Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05034 ATGGGATGTGTGATTGGTCGTCAAGCAGTTACATCAGAGAAGAAGGGTTTGGGTGGTGAGAGTAACAGGAAGGTTGATGAGGTTGATAATGGTGGTGGTGGTGATAGGGTTCAGGTGGCGACTCGAGGCGAGAGTAGGAGATCGAAGGCGAATCCGAGGCTGAGTAATCCGCCGAAGCATTTACTTGGGGAGCAGGTTGCTGCTGGATGGCCGCCTTGGCTTACTGCTGTCTGTGGGGAAGCTCTTAGTGGATGGATTCCGCGAAAGGCGGATACCTTTGAGAAAATTGATAAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACTCAGTGACTGGGAAAATTGTTGCTCTCAAGAAGGTTCGTTTTGACAATTTGGAACCTGAGAGCGTTAAGTTCATGGCTAGAGAGATTCTTATTCTGCGAAGGTTGGATCATCCAAATGTTATTAAGCTGCATGGTTTAGTTACATCAAGGATGACTTGTAGTTTGTATTTGGTGTTTGATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCGGAAATCAGGTTTACAGAGCCTCAGATAAAATGTTACATGAATCAGCTGCTATCGGGACTTGAGCATTGTCATAACCGACATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTGTTGATAATGAAGGAGTACTAAAGATTGCTGACTTTGGGTTGGCATCCTTTTTTGATCCAAACCATAGGCATCCCATGACTAGTCGTGTAGTTACACTTTGGTATCGGCCTCCAGAGTTGCTTCTTGGTGCTACAAGTTATGGTGTCGGCGTAGACCTTTGGAGCGCCGGATGCATTTTAGGAGAGTTATTGGCTGGGAAACCAATTATGCCTGGTCGTACAGAGGTTGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCATCTGATGAATACTGGAAGAGGTCAAAGTTGCCCAATGCTACGTTGTTTAAACCTCGAGAGCCTTACAAGAGATGCATAAGAGAGACATTCAAAGGTTTTCCGCCATCTGCTCTACCCCTTGTTGATAATCTTCTTGCAATTGATCCTGTAGAACGGAAAACTGCCTCAGATGCTTTAAGAAGTGAGTTCTTTATGACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAAGAAATGGATGCTAAAAGACGGGATGATGAAATGAGGAGACAAAGAGCTGCAAACAAAACTCGGGCTGATGGTTCAAAGAAGCATCGTTCTCGCGATCGTGCAGTGAAAGCTTTTCATGCTCCCGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCACTCACGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCACCACATCAAGATGCAACACTAGGTGTTCCTTTGGGATCTTCGCATCGTATTGATCCAGAAACTATACCTGCAGATGCATCTTTCATTTCAACCACATATACTTATTCAAAGGAACCATTCCAAGCTTGGTCGGGTCCAATTGGTAATGCTGCTGATATTGGTTTACCGATGCGAAAGAAACACATTGCAGGAGATGTATTAGATTTATCAAAATCACCAAAAGGTATTCTCAAAGACAAGTTTAAAGGAAAGGGAATTATAGCTTAG 1668 0.4335 MGCVIGRQAVTSEKKGLGGESNRKVDEVDNGGGGDRVQVATRGESRRSKANPRLSNPPKHLLGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDSVTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLHGLVTSRMTCSLYLVFDYMEHDLAGLAASPEIRFTEPQIKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLVDNEGVLKIADFGLASFFDPNHRHPMTSRVVTLWYRPPELLLGATSYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKRSKLPNATLFKPREPYKRCIRETFKGFPPSALPLVDNLLAIDPVERKTASDALRSEFFMTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRQRAANKTRADGSKKHRSRDRAVKAFHAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDATLGVPLGSSHRIDPETIPADASFISTTYTYSKEPFQAWSGPIGNAADIGLPMRKKHIAGDVLDLSKSPKGILKDKFKGKGIIA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05034 555 MobiDBLite consensus disorder prediction 17 31 - -
Vivi6g05034 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vivi6g05034 555 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Vivi6g05034 555 MobiDBLite consensus disorder prediction 387 428 - -
Vivi6g05034 555 Gene3D Phosphorylase Kinase; domain 1 80 175 - -
Vivi6g05034 555 CDD STKc_CDK9_like 93 377 - -
Vivi6g05034 555 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Vivi6g05034 555 MobiDBLite consensus disorder prediction 395 428 - -
Vivi6g05034 555 FunFam probable serine/threonine-protein kinase At1g54610 176 417 - -
Vivi6g05034 555 Gene3D Transferase(Phosphotransferase) domain 1 176 417 - -
Vivi6g05034 555 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05034 555 Pfam Protein kinase domain 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05034 555 SMART serkin_6 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05034 555 FunFam probable serine/threonine-protein kinase At1g54610 80 175 - -
Vivi6g05034 555 PANTHER CELL DIVISION PROTEIN KINASE 91 381 - -
Vivi6g05034 555 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05034 Vivi-Chr6 154449433 154453665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05034 85 415 Core Cell Cycle Gene Families AT5G10270 52.738 1.23e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi6g05034 Pkinase 5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05034 K08819 - gmx:100786837 966.066