Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05030 ATGTCTTCTGAGTTTCTTAGAATGTTGAACACTTCGGATTATGCATCCATTATATCAATGAACCTATTCGTAGCATTGTTATGTGCTTGTATAGTCATTGGTCATCTTCTCGAGGATCATCGCTGGGCTAATGAATCTATCACCGCTCTCCTGATAGGTCTTTGCACTGGTGAGGTTATTTTGTGGATAAGTCGCGGTAAAAGCTCACATCTTCTTGTTTTCAGTGAAGATCTTTTTTTCATATACCTTCTGCCGCCCATCATATTCAATGCCGGGTTTCAGGTGAAAAAGAAACGGTTTTTTGTTAATTTCATGACAATCATGATGTTTGGTGCTATTGGTACATTGATAAGTTGCAGCATCATAAGTTTTGGTGTAATACAAATTTTTAAGAGACTGGGTTTCAGTGAACTCGATCTAGGAGACGCTATAGCAATTGGTGCGATATTTGCCGCGACAGATTCAGTCTGCACATTGCAGGTGTTAAACCAGGATGAGACGCCTTTACTATACAGCCTTGTATTTGGCGAGGGTGTTGTGAACGATGCTACTTCAGTGGTGCTTTTCAACGCAATCAAAAGTTTTGATCTTGAACGACTTGACCATGGACTTGCTTTGAAATTTTTCGGCAACTTCTTGTATCTGTTTATAGCAAGCACCATGCTTGGAGTTTTGGGTGGTCTACTTAGTGCTTACATTATCAAAAAGCTCTATTTTGGAAGGCACTCAACCGATCGCGAAGTTGCTCTCATGATGCTAATGGCATACCTTACCTATATTCTAGCTGAATTATGGTATCTGAGTGGCATTCTCACTGTATTCTTTTGTGGAATTGTAATGTCTCACTATACATGGCATAATGTGACAGAGAGTTCAAGAATCACTACCAAACATTCATTTGCAACCTTGTCATTTGTTGCTGAGACATTTCTCTTCCTTTATGTTGGTATGGATGCCTTGGACATGGAAAAATGGAGATTTGTTAGTGATAGACCTGGGACATCTGTTGTTGTGAGTTCAGTATTATTAGCTCTAGTTCTCATCGGAAGAGCAGCATTTGTTTTTCCCTTATCATTCTTATCCAACTTGACAAAAAACTCACCAAATGAGAAAATAAGCTTTAGGCAACAGGTGATTATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTATAATCAGTTTACTATGTCGGGGCATACTCAACTGCGATTCAACGCTATCATGATCACAAGTACCATCACTGTTGTGCTTGTCAGTACAATGGTGTTTGGTATGATGACTAAGCCACTGATAAGGTTCTTGCTTCCACTCAGTCCCGTTCCAAAACGGAAAAACAGCATGGCGAATCTTGATGATACTTCACCGAAATCAGTCACAGTGCCATTCCTCGGAGATAGTCAAGGTTCTGAAGCTGATATTGATGTCAACGATTTTCACCGTCCAAGCAGCCTTCGTGATTTACTCACCACTCCAACACATACCGTTCATCGGTTATGGCGTAAGTTTGATAATGCAGTAATGCGTCCGGTTTTTGGTGGTAGGGGTTTTGTTCCTGTTTGTCCTACTTTGCCGAATCAAAATGACGGCCAACCGCAACCGCAACCGCAGTGA 1626 0.4114 MSSEFLRMLNTSDYASIISMNLFVALLCACIVIGHLLEDHRWANESITALLIGLCTGEVILWISRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFMTIMMFGAIGTLISCSIISFGVIQIFKRLGFSELDLGDAIAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLERLDHGLALKFFGNFLYLFIASTMLGVLGGLLSAYIIKKLYFGRHSTDREVALMMLMAYLTYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAETFLFLYVGMDALDMEKWRFVSDRPGTSVVVSSVLLALVLIGRAAFVFPLSFLSNLTKNSPNEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTQLRFNAIMITSTITVVLVSTMVFGMMTKPLIRFLLPLSPVPKRKNSMANLDDTSPKSVTVPFLGDSQGSEADIDVNDFHRPSSLRDLLTTPTHTVHRLWRKFDNAVMRPVFGGRGFVPVCPTLPNQNDGQPQPQPQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05030 541 Gene3D - 140 191 - -
Vivi6g05030 541 Pfam Sodium/hydrogen exchanger family 24 436 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vivi6g05030 541 PANTHER SODIUM/HYDROGEN EXCHANGER 11 516 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vivi6g05030 541 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi6g05030 541 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi6g05030 541 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi6g05030 541 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi6g05030 541 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05030 Vivi-Chr6 154374952 154378875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05030 9 540 Antiporters AT3G05030 73.655 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05030 - - tpra:123890854 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05030 6 154374952 154378875 Vivi6g05030 6 154374952 154378875 ECH
Vivi6g05030 6 154374952 154378875 Vivi1g05713 1 125752226 125756655 PCT