Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04991 ATGGCACTAGAACCAACTCTACTGTATCAACAAGACCCTTTTACCTACGGATTCAAAGAACTCTTCAACTACAACTTATTAACAGATTCTGAACCTAACTTTGACTACAATAACTTCAACCTTCAAAACCAACAACAACAACAACAACATGGTTTTCTCAACAACCAAACACAGAATTGGAACAACAACAACAACAACAACAACAACAATTCTTCACCACAAATGGAGGATCAAGTAAAAGCACCAAAGGTTGTCTCAAATCCATCTTTAGATTCCTCAATAATTCCCACTCGTTCTCGTTCCAAGAAACGCAGAATCAAAACAAGTAAGAATAAAGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTAGAACGTAACAGAAGAAAACAAATGAATGAATATCTCTCTATTCTAAGATCTCTCATGCCTCAATCTTTCGTCCAAAGGGTTGATCAAGCATCTATAATTGGAGGGGCTATTAACTTTGTGAAGAATCTTGAACAAAGGCTACAATTTCTTGGAGTTGAGAAAGAGAAAGAGGGTAAATTTGATACTACTATTGTTGCGAATAAAAGCAAACCCTTTTCTGAATTTTTCACCTTTCCACAATACTCAACAAGTGTTTGTGAGAATTCCTCTGAGACAAAAATGGGTGGAGATGAAGTTCATCAATCTAGCAATACTATTGCTGACATTGAAGTGACAATGGTGGAAAGCCATGCAAATCTGAAAATAAGATCAAGGAAAAGACCAAAACAACTCTTGAAAATGGTTTCTAGTTTGCATGGGATGTGTCTCACAATCTTGCACCTTAATGTCACTACAACTCATGAGTTTGTCTTCTATTCTATCAGTGTTAAGGTGGAAGATGATTGCAAGTTTGGATCAGTGGATGAGATAGCTTCAGCTGTATACAAAATGTTGGAAAGGATTCAACATGAGTCAATATTGAATTAA 963 0.3593 MALEPTLLYQQDPFTYGFKELFNYNLLTDSEPNFDYNNFNLQNQQQQQQHGFLNNQTQNWNNNNNNNNNNSSPQMEDQVKAPKVVSNPSLDSSIIPTRSRSKKRRIKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSILRSLMPQSFVQRVDQASIIGGAINFVKNLEQRLQFLGVEKEKEGKFDTTIVANKSKPFSEFFTFPQYSTSVCENSSETKMGGDEVHQSSNTIADIEVTMVESHANLKIRSRKRPKQLLKMVSSLHGMCLTILHLNVTTTHEFVFYSISVKVEDDCKFGSVDEIASAVYKMLERIQHESILN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04991 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 168 IPR011598 GO:0046983
Vivi6g04991 320 PANTHER MAX DIMERIZATION, MAD 49 316 - -
Vivi6g04991 320 SMART finulus 123 174 IPR011598 GO:0046983
Vivi6g04991 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 180 IPR036638 GO:0046983
Vivi6g04991 320 MobiDBLite consensus disorder prediction 55 111 - -
Vivi6g04991 320 Gene3D - 111 177 IPR036638 GO:0046983
Vivi6g04991 320 MobiDBLite consensus disorder prediction 55 77 - -
Vivi6g04991 320 Pfam Helix-loop-helix DNA-binding domain 118 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04991 Vivi-Chr6 153952769 153954468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04991 1 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.557 8.35e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g04991 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04991 - - lja:Lj1g3v4954920.1 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04991 6 153952769 153954468 Vivi6g04991 6 153952769 153954468 ECH