Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04990 ATGAAAAACCATTCCCTCTTATTCATCCTCCTCCTTCTCTCCGCCGCAAAAGCCCAAGCCCAAGCCCGAAACCAAACCAACGACTTCACAGACCCCAATTTCAACCAATTCAGCCCTTCCTTTGCCATAATCATAGTCATCTTAGTCGCCGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGCCGCTGCTCCGATTCATCTCCCTCCAACACCGGTCTCCCCATCATCAACGGCCGTCTAGTTACCGCAGCTCGCGGACTCGATTCATCCGTCATCGATACTTTCCCGATTCTCCAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAGGATCTCGAGTGCGCTGTTTGTTTATCCGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCCAAGTGTGACCACGTTTTTCACACTGAGTGTATCGATGAGTGGCTAGCTTTGCATACAACATGTCCGGTATGTCGCGCGAATCTCGTTCCTGAACCCGGTGAGTCAGTTCACGGTGTTCCCGAGTCAAACAACGAGTCACAACTAGATATTGAAGCTCAAAACGACGCCGTTCAAGCGCATACAGAGCAACAAAACGCGGAAGCTGATCCAGTTTTGGTTCCTCCGGAAGTGATTGCGTTGGAGAAAACGCTGAATAGGAATCGAACGCGTGGATCTCAGTCGAACCGGGCGCGTCGTTTTCCGAAGTCGCACTCGACCGGTCATTCGTTGGTTCAACCGGGCGAGAACACGGACCGGTTCACTTTGAAGCTGCCTTTTGCGGTGAGGAAACAGTTAATGAACCGGCAGTTACAACGGACGAGTAGTTTGATTACGTTGCCAAGGGAAAGTAGCTCGAGGCATGGTTACCGAACCGGTGAAGGAAGTAGTAAAGGGAAAAGTTCGAGCTGGGTGGACCGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTGGCTAGGGCGTTGTCGTTTAGGTCACCGAGGCCAAAGGTCAACAATAGCGACGATGAAGGAACTTCTTCTGCTACTGCTCCTATCATGCCGTCATCTGCCGTTGACTCCGCCCGACATTAA 1089 0.5051 MKNHSLLFILLLLSAAKAQAQARNQTNDFTDPNFNQFSPSFAIIIVILVAALFLMGFFSIYIRRCSDSSPSNTGLPIINGRLVTAARGLDSSVIDTFPILQYSEVKIHKIGKEDLECAVCLSEFEDTETLRLIPKCDHVFHTECIDEWLALHTTCPVCRANLVPEPGESVHGVPESNNESQLDIEAQNDAVQAHTEQQNAEADPVLVPPEVIALEKTLNRNRTRGSQSNRARRFPKSHSTGHSLVQPGENTDRFTLKLPFAVRKQLMNRQLQRTSSLITLPRESSSRHGYRTGEGSSKGKSSSWVDRSFKSDRWVFTRAPSFLARALSFRSPRPKVNNSDDEGTSSATAPIMPSSAVDSARH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04990 362 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vivi6g04990 362 CDD RING-H2_EL5-like 116 159 - -
Vivi6g04990 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 164 IPR013083 -
Vivi6g04990 362 MobiDBLite consensus disorder prediction 218 250 - -
Vivi6g04990 362 MobiDBLite consensus disorder prediction 328 362 - -
Vivi6g04990 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 284 - -
Vivi6g04990 362 MobiDBLite consensus disorder prediction 273 304 - -
Vivi6g04990 362 SMART ring_2 117 158 IPR001841 -
Vivi6g04990 362 Pfam Ring finger domain 116 159 IPR001841 -
Vivi6g04990 362 FunFam E3 ubiquitin-protein ligase ATL6 79 165 - -
Vivi6g04990 362 MobiDBLite consensus disorder prediction 332 353 - -
Vivi6g04990 362 SUPERFAMILY RING/U-box 109 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04990 Vivi-Chr6 153902158 153903680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04990 6 326 Rapid Response to Elicitors AT3G05200 46.246 8.99e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04990 K10664 - gmx:100781706 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04990 6 153902158 153903680 Vivi6g04990 6 153902158 153903680 ECH
Vivi6g04990 6 153902158 153903680 Vivi1g05671 1 124791642 124793834 PCT