Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04980 ATGCCTTCAAAAAAAACCTTCACACTCTCCCTCCTCCTCACTCTCATTCTCATCTTCTTCTTCCTCACAACAAACTCCCCTCCCTCTCAATCCCTCTCCACCACACGTAGATCCCTCCTCACCACCACTCTCACATCTTGCAACCCTCAACCCAACGCAATCCTCAACTACCACTGCATCTTCCCCCAAACCCCCCTCCTCTCTATCACCTCCCTCTCCCTCCTCCTCGTCCTCCACTTCTACATCCTCATCCAAACCGCACAACACCATTTCTCAATCGTAACCACCAAACTCGCCTCTCATCTCAATCTCTCCCCTAGCATGGCCGCCGTTACTCTTCTCGCCCTAGGTAACGGCTCGCCCGATGTTTTCTCATCTCTCGCCGCTCTTCGCGCCGGTCAGTATCGTACCGGCTTCGGCGCGATTCTCTCCGCCGGAGCTTTTGTATCGGCTCTTGTAGTCGGCTTCGTCGCGATCTACGCGGCGCCTTTTTCGGTTGATCCCGCGCCGTTTGTTAGAGATGTTTTGTTTTACTTGACTGCTGCGATGTTTCTGTTTTATGTTTATCTTAGTGCGGAGATTTTTTTGTGGCAAGCGGTTGGATTTGTGGCGTTCTATCTGTTCTTTGTTGGTTTTGTGTTTTACATGGATTTAGGGATTGTGAATCGGAGGGAGAAGAGTTCGGCGGATCTTGAGGGACAAGTTGAGTCGTGTTACGATGAGAAATTACCGGGATCAGGAGAAAAAGAGAAACACAACGCTTCTGGATTGAGTGGATCTTTTCGTTTGATTTCTAAAGCATGGGAGCTTCCTGTCTTGACTCTTTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAGCAGATTTTATGCATCAGCCAATATTGCTCTTTGTCCACTCGCCCTCTTGTATGCATGCAACTCATTCATGCCACTGAATCATCCCATAGTTTTCCTCCTCCCTAATACTCTTTTCCCTCTCTGGTCCGTAGTGCTCATGACAAGCTTCTCTCTTGCGTTTCTTCATTTTGTGTTGGAAAAAGAACCCCCGAAAACAGAACATTTGCCTGTGGTGGTTGTGGCATTTGTTATGAGTGTGTTTTGGATATCTACCACAGCTGGAGAGCTGGTGAATTGCCTTGAAGCTTTAGGCACACTTCTCAAACTGTCACCGGCATTCCTAGGTCTTACAGTGCTAGCATGGGGAAATTCGGTGGGGGATCTTGTTGCCGATGTTGCAGTTGCTAAAGCTGGTCATCCAGCAATGGCTATGGCAGGATGCTTTGCTGGACCGATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAAACGACAAATATATATCCTAAAGCCTATGAACTTAATTTCCATGTGGGTATAGTGATTGCCTTTGTGTTCCTGCTATTAAGCCTCATGGGGTCTCTTTTGGTAATCACTTGGTCTCGATTTCGAGTGCCCAGGTTTTGGGGATTCTGTCTCGTGGGCCTCTATATTGCTTTTATGGCGTTGAGTATGGTAGTAGCCATTTTTTCAAGTTGA 1554 0.4743 MPSKKTFTLSLLLTLILIFFFLTTNSPPSQSLSTTRRSLLTTTLTSCNPQPNAILNYHCIFPQTPLLSITSLSLLLVLHFYILIQTAQHHFSIVTTKLASHLNLSPSMAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFSVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYLFFVGFVFYMDLGIVNRREKSSADLEGQVESCYDEKLPGSGEKEKHNASGLSGSFRLISKAWELPVLTLLRLTIPQPAPSQWSRFYASANIALCPLALLYACNSFMPLNHPIVFLLPNTLFPLWSVVLMTSFSLAFLHFVLEKEPPKTEHLPVVVVAFVMSVFWISTTAGELVNCLEALGTLLKLSPAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPRFWGFCLVGLYIAFMALSMVVAIFSS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04980 517 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 261 515 - -
Vivi6g04980 517 Pfam Sodium/calcium exchanger protein 360 510 IPR004837 GO:0016020|GO:0055085
Vivi6g04980 517 Pfam Sodium/calcium exchanger protein 73 214 IPR004837 GO:0016020|GO:0055085
Vivi6g04980 517 Gene3D - 104 226 IPR044880 -
Vivi6g04980 517 Gene3D - 293 512 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04980 Vivi-Chr6 153789294 153797448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04980 9 517 Antiporters AT1G08960 67.477 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04980 K13754 - gmx:100775437 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04980 6 153789294 153797448 Vivi6g04980 6 153789294 153797448 ECH