Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04978 ATGGATCATCAAGGGCATAACCAGAATCCGCCGATGGGGGTTGTCGGTAGTGGAGGTCAAATGCCGTATGGATCTAATCCATATCAGCCAAACCAAATGCCTGGGGCACCTGGATCAGTTGTTACAGGGGGCATGCAATCAACTGGTCAACCTGCTGGAGCTCAGATGGGTCAACATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAGCAGCAGCTTCAGCAACAGCTCCAAGCTTTTTGGGCAAACCAGTACCAAGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTTAGAATGATATCAGCTGAGGCACCGGTCATATTTGCAAGGGCCTGTGAGATGTTCATATTGGAGTTAACCCTGCGTTCATGGAACCACACTGAAGAGAACAAAAGGAGGACGCTTCAGAAGAATGATATTGCAGCTGCAATCACCAGGACTGATATCTTTGATTTCCTGGTTGATATTGTGCCTCGCGAGGACCTGAAAGATGAAGTGCTGGCATCAATCCCAAGAGGAACAATGCCCGTTGGTGGACCTGCTGATGCTCTTAACTACTGCTACATGCCACCTCAACATGCCCCCCAAGTTGGAGCTGCTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTATGCTCAGCAGCCTCACCCCTACATGGCACCACAAATGTGGCCACAGCCTCCAGACCAGCGACCACCATCTCCAGATCACTAG 777 0.4903 MDHQGHNQNPPMGVVGSGGQMPYGSNPYQPNQMPGAPGSVVTGGMQSTGQPAGAQMGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALNYCYMPPQHAPQVGAAGVIMGKPVMDPNMYAQQPHPYMAPQMWPQPPDQRPPSPDH 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04978 258 Pfam Core histone H2A/H2B/H3/H4 55 162 IPR007125 GO:0003677
Vivi6g04978 258 Gene3D Histone, subunit A 61 177 IPR009072 GO:0046982
Vivi6g04978 258 SUPERFAMILY Histone-fold 62 171 IPR009072 GO:0046982
Vivi6g04978 258 FunFam Nuclear transcription factor Y subunit gamma 64 177 - -
Vivi6g04978 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 60 192 - -
Vivi6g04978 258 MobiDBLite consensus disorder prediction 241 258 - -
Vivi6g04978 258 MobiDBLite consensus disorder prediction 1 25 - -
Vivi6g04978 258 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04978 Vivi-Chr6 153774592 153777281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04978 1 245 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.789 9.73e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi6g04978 CBFD_NFYB_HMF 5.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04978 K08066 - gmx:100527803 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04978 6 153774592 153777281 Vivi1g05666 1 124552028 124554149 ECH
Vivi6g04978 6 153774592 153777281 Vivi6g04978 6 153774592 153777281 ECH
Vivi6g04978 6 153774592 153777281 Vivi1g05666 1 124552028 124554149 PCT