LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g04962	ATGCAAGACATTTTCGGATCAGTTCGCCGGTCACTGGTCTTCCGTCCTGCTTCACCGGAGAACGAAGATCACTCACTCGGAGTTGGCGGAACCCTAGTTGATAAGATCGGTTACTGCATCCGTAATTCTAGAGTTTTCTCTAAACCTTCGCCGCCGTCACCTCCGATTCCGAAGGATACCGTGCCGCAAATCAGATGGAGGAAAGGAGAGTTGATCGGCTGTGGTGCTTTCGGTCATGTTTACGTTGGAATGAATCTCGACTCCGGAGAGCTTTTAGCCGTTAAACAGGTTTTGATTGCAGCAAGTAGTGCTTCGAAGGAGAGGGCACAGGCTCATGTAAAAGAGCTTGAGGAAGAAGTTAAACTGCTTAAAGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACAGTCAGAGAAGAAGATACCTTAAATATTCTCTTGGAGTTTGTTCCTGGTGGATCCATATCTTCACTGTTGGGGAAGTTTGGAGCTTTCCCAGAGGCTGTCATAAGAACTTATACGAAGCAGATATTGCTTGGACTCGAGTACTTGCATAAAAATGGAATCATGCACAGGGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAACTTGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATGTCTGGTGCCAAGTCGATGAAGGGTACTCCATATTGGATGGCTCCCGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGCTGTACTGTAATTGAGATGGCCACAGGAAAGCCTCCTTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGAACAACTAAGTCTCATCCACCTATACCTGATCATCTATCTGCTGGAGCAAAGGATTTTCTTCTAAAGTGCTTGCAGAAGGAACCAATCTTGAGGCTATCAGCATCAGAACTGCTGCAGCACCCCTTTGTTACCGGTGAAAATACGGACTCGAATCCTCAGTCATCTATTGACATGGGAAATTTTAGAGCTTCTTCGCCATCATGTGCTCCAAATGTTGAATCCTTACTATGCAGCTCAACAGCAAATCCTGAGGACTCAGGAAATAATCAATTATGGGGAATGGGCAATGATGATGATGATGACATGTGTGTGATTGATGATAAAGAAGAGTTCTCAGCGTGCGATGTCAAACACAAATCTTTTGTGCCAGATAATTTTGAGAGTTTCAACCCAATGTCTGATCCCTCTGAAGACTGGGGGTGTAAATTTGATGCAACTCCAGAACTGGAAAATAGAGAAGTTAGTCTGGACACTGATGAAAGTTGCATGTCACGTACTCAATTGGAGTCTAATAAGGAACAAAAAGATTTATCCTTTCCAAGTGTGCCATCTCTGTCAGAAGAAGATGACGAGCTCACCGAGTCCAAAATTAGAGCTTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTTCAACAGTTTAAATGCATCTTGCTCTCCCAACGTGGTTGACAGCCCAAGTGATGACATCGCTGGTCGAAAATACTTGAGATTACCTCCTAAAAGCAAATCACCAAGTCGGGTACCATTTAGCTCTCCTTCCAAAGCAGTTGACAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCGTCAGCAGTTGGAAATGTAAATAGTCATGGTTCACAAGATGTTCCAGCAACTCCCGTTGATGAACGGAAAGGAATGATAGTTGACTCTCAGCAGGAGCCCTTTAGCCCAAGTTTAAGCTTTTCCGAAAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTAGAGAGAAAACGAGAAATGATGCGCCAAGGTATGGCAAAGACATCCTCACCAAAGGACCGAGCTTTACGTCGACAGCCGACAAGATTTGCTTCTCCCAGTTAA	1962	0.446	MQDIFGSVRRSLVFRPASPENEDHSLGVGGTLVDKIGYCIRNSRVFSKPSPPSPPIPKDTVPQIRWRKGELIGCGAFGHVYVGMNLDSGELLAVKQVLIAASSASKERAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATMSGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPILRLSASELLQHPFVTGENTDSNPQSSIDMGNFRASSPSCAPNVESLLCSSTANPEDSGNNQLWGMGNDDDDDMCVIDDKEEFSACDVKHKSFVPDNFESFNPMSDPSEDWGCKFDATPELENREVSLDTDESCMSRTQLESNKEQKDLSFPSVPSLSEEDDELTESKIRAFLDEKALELKKLQTPLYEEFFNSLNASCSPNVVDSPSDDIAGRKYLRLPPKSKSPSRVPFSSPSKAVDNAGSPGSNGRSSSAVGNVNSHGSQDVPATPVDERKGMIVDSQQEPFSPSLSFSERQRKWKEELDQELERKREMMRQGMAKTSSPKDRALRRQPTRFASPS	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g04962	653	FunFam	Serine/threonine-protein kinase STE11	62	156	-	-
	Vivi6g04962	653	MobiDBLite	consensus disorder prediction	439	479	-	-
	Vivi6g04962	653	SMART	serkin_6	66	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g04962	653	SUPERFAMILY	Protein kinase-like (PK-like)	65	346	IPR011009	-
	Vivi6g04962	653	MobiDBLite	consensus disorder prediction	511	653	-	-
	Vivi6g04962	653	Coils	Coil	99	126	-	-
	Vivi6g04962	653	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	61	340	-	-
	Vivi6g04962	653	MobiDBLite	consensus disorder prediction	540	579	-	-
	Vivi6g04962	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Vivi6g04962	653	FunFam	Mitogen-activated protein kinase kinase kinase 2	65	357	-	-
	Vivi6g04962	653	MobiDBLite	consensus disorder prediction	607	629	-	-
	Vivi6g04962	653	Coils	Coil	609	633	-	-
	Vivi6g04962	653	ProSitePatterns	Protein kinases ATP-binding region signature.	72	95	IPR017441	GO:0005524
	Vivi6g04962	653	Gene3D	Transferase(Phosphotransferase) domain 1	64	354	-	-
	Vivi6g04962	653	Pfam	Protein kinase domain	67	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g04962	653	MobiDBLite	consensus disorder prediction	446	467	-	-
	Vivi6g04962	653	CDD	STKc_MAPKKK	65	329	-	-
	Vivi6g04962	653	ProSiteProfiles	Protein kinase domain profile.	66	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g04962	Vivi-Chr6	153625756	153631634	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g04962	1	652	MAP Kinase Kinase Kinase	AT1G54960	56.017	0.0	665

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vivi6g04962		Pkinase	6.1e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g04962	K20606		-	gmx:100807537	1040.8