Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04954 ATGTCAGATTCACAGCCAAACTCAGAGGTTTTCACCGTTCGTATCGTCTCCATAGACCATTACATGGCACCGCCAATCCCCGCCATCGATATCTCTTACAGCACCTTCCAAGGTGGAAAAGTGAACGAAGTTCCGGTGATAAGAGTATACGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATACATGGAGCTTTGCCTTATTTATATGTGCCGTGTTCAGATATACCGCTTCAACTAGACCAAGAAGGTGATGCATACACCTATGCTGTAGCTGCTTCTCTTGAGAAAGCTTTGAAGCTTAAAGGCAGTGCTGGGTCATCGAGACAACATGTACATGGCTGCAGTCTTGTACGAGCAAGGAAATTTTATGGATATCGCTCATCCGAAGAGTTTTTTGTAAAGATTTACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAACTCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTCACGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAGGTTCCGCCATCCCATGCCAAATTCTATTCACAAGAAATTAGACTTCAATAGCCAGCACCAAAAGGCAGATATTGGCGCTGATGCATGTTTTGAGTCAAATGAATTTGGTACTTCGACAAGTGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTGGACGATATTCTTAATCAGCAGTTTAAAATGTTTTCATCTCTCTCACAAACAAGGTCAAATGTAAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGCGGAAACGGACGGGGGTTCACGAGGCTACTGTGCCTTCTGATCCTGGTAAACCACTTCCAGAAGATGTCATGAAACTTCTCTCATCTGGTCTTGACTCTGAGAAAAAATTGATTCAATTGTGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTAGAGAAGGAACTCAGAGAAATAGACATAATAGGCTCAGCATCGCCACCAGCATCGCTGTGTAAATATGCCAAACTTCTTAAGGAAGGGACTGACACAAGTCCAAAGTTGTTGAAAATTGGTGAAATGCAATCAGCTGGAAATATCGGAATGTTGGACATTAAGGATGCTGATATGGAAGCACAAAATCTTCTTAAGTGGCTTGCGACTTCTCAAGCGGCAGAGGATATAAACTCTGATGACGAACTTGCATGTGAAACAGCCTTGAGCCCCTTGCTTCCTGCTGCAACAGTTGATAAGATGCTAGAGAAAGCGAATATAGCTTTTGAGAATGAGTCCCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTAGACCAACCAAAGGAAAAGCCTTCTCGTGTTGGTCACATTTGTCCTGTTGAAGCTTCATCAGACATCATGATACCCCAAGTTGATGGTTCTAATGATGATGAGTTCCCAAGTCCACGTGCTAGTTTGGCTGGAATCTCTAATGCAGTTGAGTTAAATAGTGAATACAAAAGAGCTTCTGAGTACCATTTACTGCAGAATACCGACACAAGTACAGTTACTGCAGACAAAAGGAATAGAAAATGGGGATCTTTGCCTTTTTCCATGACCGGGAAGGTTAATAATGAGAGCAAAGATTCTGCTCTCTCCGATCACTTAATCAGAAACGCGTTTAAAAATAGTACTTGTATTAAGAGAAATGTTGCCGAAGGCGCTTCAGATTCAAAAGAAGTTCATAGTATGGTTAACTGTTCGTTACGGGACTTGATGAGACGAAAGCGATCCTATCGAGTTGAACATGATGACAGGGAACCTGGAAATGCAAAGAAGCTTATTTTGGACAGGCATGGGGGACCAAAAACATGCCTTTGGCCAAAACAAATTGAATTGGAAGCAATGCAAACCGATGAAGTAGAAACTGAACTCCAGAAAAATTCTGATCATGAAGTGAGAGGTCTTGATTATTTAGTGTGTGGGAAACAGTCGCTTCCATCTGCAAATCAAAGTTCTTCTCCAATGCATGAAGGGCAAGGCCTACTTGAAACTTCACATTTTATTTATTCCATGGACAAATCTGTGGCTTGGAGGGAGAAAAACCCTAAGGATGAAACAACTTATGCAAAACCTGTAGGTTCTGATGTTTATACCCCTAATCCCTCTCTAGGCACTCAGCTGAGAACTGATGTTGATTATATAGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTATACTGCTTTAGGTAGTAGACAGAACGCATTAGTTGATGATGAAGTTCCGCGAAAAAGTAACTGCATGGATAAAATTTCTTGTGGTAACATATGTTTTGTGCCGCATGATCAGACGAAGTCTTATGAGCATGCCATGGGAAAAAGTGTTGCAAGTGACACAAGAGTATTGCTGAGTGAAAAGGCTGATAATCAAAAGCTGGATAAAAAATTGCCGTGTGAGACTGTTGGCTCAAAACCCATTGATGACCTGAAGAGTAATCACATGAAATTAACTGAAATAACCGTACGCAATAGCTCTTCGATTGACAAGAATCTTGAAAGTAATTTGTCCTTGCCAACCTTCTTTGATACCAGTTTACATTTGGATGAGGATGATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCCGCAAGGAATTCCCCGAAACAGGTTGAACCTAGGAACAACTGTGTTACTATCAAAACTCCCAGATCCTCTGGAACAAAGAGTATTTCTACTTACTATCAAAATGATGGCTCTCCCCTATACCTATTAACACCTACTATTTTGCCTCCTTCTGCTGGTTCTGTGCAGAGATGGCTAGTGTGTGATGAAAGAGAGGATCAGGATGCACCTGCAGAGAATCAGGATGTACCTAAATGCACTTCTGAACCTCTTCTCATGCATACTCCTGATCAAATGCGTCAAGAACCTGGTGGAGAAGATAAGGATATGTCTAGATGCACTTCTGGATCTCCTCTTAGGCATGAGCTGTATCAAGATGCTGACACAGAAAAGAAGCTTACATGTATTAGCGAAGGGCAAACAGAAAGAATAAAAGCATGCCTGGATGGCTTGCAAGATATTTCTCAGATATCAGGCCCGGAGGAGAAATCAAGTTTTACCCCTCTAAGCCAAATTGGATTTCAAGACCCTGCAAGTGTTGGCCGTGGACAGCAATTGATATTAGTCAGTATAGAGATTCTTGCAGAATCTAGAGGAGACCTTTTACCAGATCCTCAATTTGATGGGGTAAATATTGTAGCTCTTGGTTTTCAAAACGATTGTGATGCTACTATCGAAGTTGTAGTTCTTTTGCATAATAAATATGTACCTTTTCAGAGAAGTCTTGATGGTCTATCAGACTGCAAAATACTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTACGAAGATCGTGTCTTCATCAGATCCAGATATATTGATGGGCTGGGATATTCAAGGGGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCTTGGATTAATTCTCAAGACATCAAAATATCTGAAAAAAGTATCTTGGAACCGGACATCCTGGATACTCCTAGTCAAGATTGTTGTGCACAAGAAAGTTCAATAATTGAGGATGAATGGGGAAGGACACATGCTAGTGGAGTTCATGTAGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGCGGAGAAGTCAAGCTGAATTTATATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGAAAAGTTCCTTCACTTAACAACAATGTGCTGACAAAATGGTTTTCAAGTGGTCCAGGACAAGCAAGATATCAGTGTATCAAATACGTCGTGGATAAAGCAAAGCTGAACCTTCAGATATTAAACCAACTTGATATGGTTAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGCTCCCAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCCCATACACAAAACTATGTTGCTATCTCACCGGGAAAACAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCGGGATTTTATTCAGATCCCGTTGTTGTACTAGACTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGGGGCATCAAAGGCCCACACGCTTGGGGTAAGTCCATTTTCACCAGAGCAACATGTTCTGCAGGCTTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTCCAAAGAGGTATACTTCCCCGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCGATGAAAAAGTTGTCTCCTTCAGAGCAAGTCCTTCAACGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACAGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATCGTTCAATGTGGACGCTGTACCCTGGAAAAAGCTATATCATTTGTCAATCTAGAAGATAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTGCTTAAAGGACGCACTGTCAAAGAGGCCTTTCAAATTGGGAGCGAGATTGCTTCTGCTATTACTGCTATGAATCCTAGTCCTGTCACCTTGAAGATGGAGAAAGTTTATCACCGGTGTTTCCTCATTACTAAAAAGCGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAACTGAACCAATTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCTAAGATAATGGAGCAATCTTTGAGACTCTTTTTTGAGCACCAGAGTTTATTGGAGGTAAAGACTTATTTGCAACGTCAGTGGAAGAGAATTCTTTCAGGCAGAGTTTCCTTAAAGGATTTTATCTTCGCAAAGGAGGTTCGCTTAGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGATTGATCGAAGGGCTGAACCACGTTATGCGGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGTCTGGCTGATATGCGATTATTTGGGCTTGTTGGTGCCGACCTGAACCTGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCTGTAAAGCATGCATTCACTTCAAACATCCATCGAACCAGAATTGATTCTTACTATCTCTCAAAACACTGTGTACTCTGTGGTGGGTTGGTCCAGGCATCAGCCCGTTTATGTAATCAATGTTCTGCGAATGAGGTGGCTGCGGCAACAGCAGTGATTGGTAAAACTTCGAAGTTGGAGCAAGAGATGCAACATCTTGTGTCTATATGTCACCACTGTGGAGGCGGTGATAGGCTTCTCGAAAGTGGTGTGAAGTGCACGTCGATTTCATGCTTGGTGTTTTATGAGAGGCGAAAAGTTCAGAAAGAACTACTTGCCGCTACCAATGTTGCTGCAGATAGAGGTTTCTATCCAAGATGCACGATTGAATGGTTCTGA 5733 0.4165 MSDSQPNSEVFTVRIVSIDHYMAPPIPAIDISYSTFQGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQEGDAYTYAVAASLEKALKLKGSAGSSRQHVHGCSLVRARKFYGYRSSEEFFVKIYLYYPQDVSRAATLLLAGAVLDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPNSIHKKLDFNSQHQKADIGADACFESNEFGTSTSDKAHCPKRQSICELEGDTSVDDILNQQFKMFSSLSQTRSNVNMVQSLVPIWEEQRKRTGVHEATVPSDPGKPLPEDVMKLLSSGLDSEKKLIQLCSEAETTLFCTPLEKELREIDIIGSASPPASLCKYAKLLKEGTDTSPKLLKIGEMQSAGNIGMLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETALSPLLPAATVDKMLEKANIAFENESQQECQDILDSIDDMLELDQPKEKPSRVGHICPVEASSDIMIPQVDGSNDDEFPSPRASLAGISNAVELNSEYKRASEYHLLQNTDTSTVTADKRNRKWGSLPFSMTGKVNNESKDSALSDHLIRNAFKNSTCIKRNVAEGASDSKEVHSMVNCSLRDLMRRKRSYRVEHDDREPGNAKKLILDRHGGPKTCLWPKQIELEAMQTDEVETELQKNSDHEVRGLDYLVCGKQSLPSANQSSSPMHEGQGLLETSHFIYSMDKSVAWREKNPKDETTYAKPVGSDVYTPNPSLGTQLRTDVDYIVRAPERCQQTDYTALGSRQNALVDDEVPRKSNCMDKISCGNICFVPHDQTKSYEHAMGKSVASDTRVLLSEKADNQKLDKKLPCETVGSKPIDDLKSNHMKLTEITVRNSSSIDKNLESNLSLPTFFDTSLHLDEDDEMPGNALDVFLPISARNSPKQVEPRNNCVTIKTPRSSGTKSISTYYQNDGSPLYLLTPTILPPSAGSVQRWLVCDEREDQDAPAENQDVPKCTSEPLLMHTPDQMRQEPGGEDKDMSRCTSGSPLRHELYQDADTEKKLTCISEGQTERIKACLDGLQDISQISGPEEKSSFTPLSQIGFQDPASVGRGQQLILVSIEILAESRGDLLPDPQFDGVNIVALGFQNDCDATIEVVVLLHNKYVPFQRSLDGLSDCKILNFTDEKHLFKEFTKIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDIKISEKSILEPDILDTPSQDCCAQESSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLNNNVLTKWFSSGPGQARYQCIKYVVDKAKLNLQILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVGASKAHTLGVSPFSPEQHVLQALKDQILLTPNGVMFVPSKVQRGILPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLEDKWNAKVIYGDTDSMFVLLKGRTVKEAFQIGSEIASAITAMNPSPVTLKMEKVYHRCFLITKKRYVGYSYESPDQTEPIFDAKGIETVRRDTCEAVAKIMEQSLRLFFEHQSLLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRIDRRAEPRYAERIPYVVIHGEPGARLADMRLFGLVGADLNLWFAEMPRPIREASVKHAFTSNIHRTRIDSYYLSKHCVLCGGLVQASARLCNQCSANEVAAATAVIGKTSKLEQEMQHLVSICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAATNVAADRGFYPRCTIEWF 1910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04954 1910 CDD POLBc_zeta 1355 1772 - -
Vivi6g04954 1910 Pfam DNA polymerase family B 1348 1789 IPR006134 GO:0000166|GO:0003677
Vivi6g04954 1910 Gene3D - 1649 1809 IPR042087 -
Vivi6g04954 1910 MobiDBLite consensus disorder prediction 996 1011 - -
Vivi6g04954 1910 Gene3D - 1108 1390 IPR036397 GO:0003676
Vivi6g04954 1910 Gene3D DNA Polymerase, chain B, domain 1 28 196 - -
Vivi6g04954 1910 FunFam DNA polymerase 30 196 - -
Vivi6g04954 1910 SUPERFAMILY Ribonuclease H-like 34 1354 IPR012337 -
Vivi6g04954 1910 ProSitePatterns DNA polymerase family B signature. 1574 1582 IPR017964 GO:0000166|GO:0003676
Vivi6g04954 1910 Gene3D Palm domain of DNA polymerase 1393 1638 IPR023211 -
Vivi6g04954 1910 SUPERFAMILY DNA/RNA polymerases 1394 1761 IPR043502 -
Vivi6g04954 1910 Pfam DNA polymerase family B, exonuclease domain 1140 1276 IPR006133 -
Vivi6g04954 1910 Pfam DNA polymerase family B, exonuclease domain 55 195 IPR006133 -
Vivi6g04954 1910 PRINTS DNA-directed DNA-polymerase family B signature 1516 1528 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi6g04954 1910 PRINTS DNA-directed DNA-polymerase family B signature 1572 1580 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi6g04954 1910 PRINTS DNA-directed DNA-polymerase family B signature 1407 1420 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi6g04954 1910 Pfam C4-type zinc-finger of DNA polymerase delta 1809 1882 IPR025687 -
Vivi6g04954 1910 Gene3D Helix hairpin bin 1473 1533 - -
Vivi6g04954 1910 FunFam DNA polymerase 1089 1390 - -
Vivi6g04954 1910 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 6 1761 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vivi6g04954 1910 MobiDBLite consensus disorder prediction 991 1012 - -
Vivi6g04954 1910 CDD DNA_polB_zeta_exo 1079 1329 - -
Vivi6g04954 1910 SMART polmehr3 1080 1586 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vivi6g04954 1910 FunFam DNA polymerase zeta 1474 1533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04954 Vivi-Chr6 153528870 153543672 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04954 7 209 Core DNA Replication Machinery Family AT5G63960 24.519 2.05e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04954 K02350 - gmx:100777934 2739.53