Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04942 ATGCCGTCGTCAGTTCTTTCTAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCAGCCCATGCTTCTGCAACTAACAACTGTTTTACAGTGTTCTTTAATCCAAGGGCTAGTCCTTCTGAGTTTGTCATACAACTTTCAAAATATATCAAAGTTGTGTACCATACACGCGTTTCTGTTGGTATGCGTTTTAGGATGCTTTTTGAGACTGAAGAATCAAGTGTGCGCAGGTACATGGGGACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCAGAATTCTCATTGGAGGTCTGTCAAGAGCAGGCTGAATCTGACAAAAACAGTTCGCAAATTTTCTATTGATTCAAATTTAACACCCACCACTGGGTCTGAATTTCATTCTAGCCCGGCTGCTAATGTCATTAAGCATGATGAAAAAGTGGATGAAGAATCTGTTGAAGGTGCTTTTGTATTCACATCAGAAAATTTTGATAAATATGCTCATCAGTAA 498 0.4016 MPSSVLSSDSMHIGLLAAAAHASATNNCFTVFFNPRASPSEFVIQLSKYIKVVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWQNSHWRSVKSRLNLTKTVRKFSIDSNLTPTTGSEFHSSPAANVIKHDEKVDEESVEGAFVFTSENFDKYAHQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04942 165 Pfam Auxin response factor 19 102 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi6g04942 165 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 106 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi6g04942 165 Gene3D - 57 116 - -
Vivi6g04942 165 FunFam Auxin response factor 57 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04942 Vivi-Chr6 153374259 153379123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04942 1 102 B3 DNA Binding Superfamily AT5G37020 89.216 8.30e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04942 - - vvo:131610588 312.768