Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04909 ATGATGATGACAACAATGGAAGGAATAATGGACAAAGCTGTAATAGATGATGTGATTAGAAGATTGTTAGAAGGAAAAGGTGGAAAACAAGTTCAGCTTTCTGAATCTGAGATTCGTCAACTTTGCATCAACGCTAGACAGATTTTTCTATCTCAACCTATTCTTCTTGATCTTCGTGCTCCTATCCGCATTTGCGGTGATATACATGGCCAGTACCAAGATTTATTGCGACTTTTTGAATACGGCGGCTTCCCTCCGTCGGCGAACTACTTGTTTCTTGGTGATTATGTTGACAGAGGGAAACAAAGTTTGGAGACAATATGCTTGCTTTTGGCTTACAAAATAAGGTATCCGGACAAAATTTTTCTCTTAAGAGGAAACCACGAAGATGCAAAGATAAACCGGATATATGGTTTTTACGACGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTTACCGACTGTTTTAACTGTTTGCCGGTAGCTGCACTCATTGACGACAAAATACTTTGTATGCACGGAGGATTGTCTCCCGAGTTACAAAGTTTAGATCAGATAAGAGAGGTTGTGAGGCCTACGGAAATTCCTGATAATGGTCTCTTGTGTGATCTGCTTTGGTCTGATCCTGATTCTAGTATTGAAGGTTGGCAAGATAGTGACCGAGGCGTTTCGTGTACTTTTGGACCTGATGTTGTCGCAGATTTTTTGGATAAAAATGATCTTGATCTTATATGCAGGGGTCATCAGGTTGTCGAGGATGGATATGAGTTTTTCGCTAAACGGAGATTAGTCACGATATTCTCTGCCCCAAATTATGGTGGGGAATTTGACAATGCCGGTGCATTATTATCAGTTGACGAATCTCTTGTATGTTCCTTTGAGATACTGAAACCCGCTGATAAGGAAGTAGGGACAAGTTCAGCAAAAATGAATTTTAAGAAGCCCCCAACATTGGGATAG 969 0.4035 MMMTTMEGIMDKAVIDDVIRRLLEGKGGKQVQLSESEIRQLCINARQIFLSQPILLDLRAPIRICGDIHGQYQDLLRLFEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDKILCMHGGLSPELQSLDQIREVVRPTEIPDNGLLCDLLWSDPDSSIEGWQDSDRGVSCTFGPDVVADFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPADKEVGTSSAKMNFKKPPTLG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04909 322 SUPERFAMILY Metallo-dependent phosphatases 9 305 IPR029052 -
Vivi6g04909 322 SMART pp2a_7 33 303 IPR006186 GO:0016787
Vivi6g04909 322 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Vivi6g04909 322 Gene3D - 7 311 IPR029052 -
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Vivi6g04909 322 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Vivi6g04909 322 CDD MPP_PP1_PPKL 14 301 - -
Vivi6g04909 322 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 19 310 - -
Vivi6g04909 322 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Vivi6g04909 322 FunFam Serine/threonine-protein phosphatase 7 311 - -
Vivi6g04909 322 Pfam Calcineurin-like phosphoesterase 62 253 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04909 Vivi-Chr6 153104007 153106744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04909 56 249 Calmodulin-binding Proteins AT5G63870 33.624 7.99e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04909 K06269 - gmx:100805030 620.542