Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04908 ATGACCAAACGAACAGCATCTAATTCCGATGATATCTACCTCAACCTCTTAATCAAGCTATATCGTTTCCTAGTCAGAAGGACCAATAGCAAATTCAACGCTGTTGTACTCAAGAGGTTGATGATGAGCAAAGTTAACCAACCTCTGATTTCTTTGAAAAGGTTGACTGATGCCATGAAGGGGAAGGAGTGCAAAGTTTGTGTTGTTGTAGGTGTAGTAACTGATGATAGCAGAGTATATAACATACCGGCAATTAAAGCTACTGCACTAAGGGAACTTCCGGCAATTAAAGTTACAGCACTAAGGTTCACAGATATAGCACGTTCACGTATTGAAAGTGCAGGTGGTCAATGCCTAACTTTTGATGAACTCGTCAAGATGGCTCCCCTTGGACAAAACACGGTTCTAATAAGAGGCCCGAAGAATGCTCAGGAAGCAGTGAAACATTTTGGTCGGGCTCCTGGTGTGCCGCATAGCCATGCCAAACCTTATGTATGA 498 0.4277 MTKRTASNSDDIYLNLLIKLYRFLVRRTNSKFNAVVLKRLMMSKVNQPLISLKRLTDAMKGKECKVCVVVGVVTDDSRVYNIPAIKATALRELPAIKVTALRFTDIARSRIESAGGQCLTFDELVKMAPLGQNTVLIRGPKNAQEAVKHFGRAPGVPHSHAKPYV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04908 165 SUPERFAMILY Ribosomal proteins L15p and L18e 9 138 IPR036227 -
Vivi6g04908 165 PANTHER 60S RIBOSOMAL PROTEIN L18 2 91 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vivi6g04908 165 Gene3D - 1 165 - -
Vivi6g04908 165 FunFam 60S ribosomal protein L18 1 165 - -
Vivi6g04908 165 Pfam Ribosomal protein 60S L18 and 50S L18e 2 91 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04908 Vivi-Chr6 153095630 153099010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04908 2 165 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 60.606 1.35e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04908 K02883 - nnu:104609266 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g04908 6 153095630 153099010 Vivi1g05603 1 123173293 123174972 PCT