Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04883 ATGGGAGACACTGGTAAAAATAAGAGAATCGCCATTATTGGCGTCTCTACCTTCTTATTAGTAGCTATGGTTGTGGCCGCCGTGGTTAGTGTTAATCTCAGCAAAAAGGAAGCGGTAGAAGATTCAAAAGATGCACATCTATCCTCATCAATGAAAGCTGTTAAAAGTCTTTGTGCACCAACAGCATACAAGGAGGAATGCGAGGAAAGTCTCACATCCCAAGCTGGAAACACAACCGATCCAAGAGAACTCATCAAAATCGCCTTCAACGTAACCATCACGAAAATTAGCCAAGAGCTTGAAAAAACTCAACTCCTTAAAGATGTTGAAAAAGATCCAAGAACCAGTGATGCATATGATACATGTAAGGAACTCATGCATCTTTCCATTGAGGAATTCAAAAGGTCATTGGAAAGGTTTAACCGCTTTGACCTTAATAACATCGAGAGAATCCTCGCGAGTCTTAAGGTTTGGTTGAGTGGTGCTATAACATACCAAGAAACTTGTTTGGATGCTTTTGAGAACACTACTGGTGATGCCGGTCAGAAAATGCAGGAGATTTTGAAAGCTTCTATGCATATGAGTAGCAATGGTCTTTCCATCATTAATGAACTCTCCAAAGTCCTCATAAACATGAAACCTCCATCTCGTCGTCTTATGGATGATTCTGAGATTGATCCTGAGGTTATTGGTAATGGTGATTTCGAGCTTCCTGAATGGGTTGAGGATCGCGTTGGTGTTAGGAAACTACTTAAAATGACAGGAAGAAAAACGAATGCTCAACTTGTTGTTGCTAAGGATGGAAGTGGAAATTGTACCACAATCAATGAAGCTCTTCGCTTTGTTCCCAAAAAGAACTTGAGGCCATTTGTTATTTACATTAAGGAAGGTGTTTATGCCGAATACGTTGAAGTTCCTAGAAACTTGACTCACGTCGTTTTCCTTGGCGATGGTGCTAAAAAAACCCGTATTACTGGTAACAAAAACTTCGTTGATGGTATTGGTACCTTCAGAACCGCAACCGTTGCTGTTCTTGGAGATTTCTTTGTTGCACTTGGTATCGGTTTTGAAAACACTGCTGGAGCAATCAAGCATCAAGCAGTTGCATTGAGAGTCCAATCTGACAGATCAATCTTCTATAAATGTAGAATGGACGGTTACCAAGATACACTTTATGCTCACACCATGCGTCAATTCTATCGCGATTGCATCATCTCCGGTACCATAGACTTTGTCTTTGGCGACGCTGTAGCTGTTCTACAAAACTGCACATTCGTTGTCCGAAAGCCAATGGAAAACCAACAATGCATTGTGACAGCACAAGGCAGGAAGGAGAAAACACAGCCATCAGGATTAGTCATTCAAGGAGGTTCCATTGTGTCAGATCCTAGTTACTATCCAGTTAGGTTTGACAACAAGGCTTACTTGGCTCGCCCGTGGAAGAATTTCTCAAGAACTATCTTCATGGATACATACATTGGCGACTTGATTACACCTGATGGTTATATGCCATGGCAAACACTTCAAGGAGTGACAGGAACTGAAACATGTTTCTATGCTGAGTTCAATAACCGCGGCCCTGGTTCTGATATCTCAAAGCGCGTGAAATGGACAGGTGTTAAAACTATTACATCTGAAGGAGCAGTTGGTTTCTTGCCATCCAAGTTTTTCCTCGGAGACGATTGGATTAGAGTTACTAGCATTCCTTATTATCCAGGAGGAGCTACGGGCTCTGCTGTAGTACCAACTCATTGA 1755 0.4177 MGDTGKNKRIAIIGVSTFLLVAMVVAAVVSVNLSKKEAVEDSKDAHLSSSMKAVKSLCAPTAYKEECEESLTSQAGNTTDPRELIKIAFNVTITKISQELEKTQLLKDVEKDPRTSDAYDTCKELMHLSIEEFKRSLERFNRFDLNNIERILASLKVWLSGAITYQETCLDAFENTTGDAGQKMQEILKASMHMSSNGLSIINELSKVLINMKPPSRRLMDDSEIDPEVIGNGDFELPEWVEDRVGVRKLLKMTGRKTNAQLVVAKDGSGNCTTINEALRFVPKKNLRPFVIYIKEGVYAEYVEVPRNLTHVVFLGDGAKKTRITGNKNFVDGIGTFRTATVAVLGDFFVALGIGFENTAGAIKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHTMRQFYRDCIISGTIDFVFGDAVAVLQNCTFVVRKPMENQQCIVTAQGRKEKTQPSGLVIQGGSIVSDPSYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLQGVTGTETCFYAEFNNRGPGSDISKRVKWTGVKTITSEGAVGFLPSKFFLGDDWIRVTSIPYYPGGATGSAVVPTH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04883 584 FunFam Pectinesterase 255 574 - -
Vivi6g04883 584 Pfam Plant invertase/pectin methylesterase inhibitor 53 201 IPR006501 GO:0004857
Vivi6g04883 584 Pfam Pectinesterase 262 559 IPR000070 GO:0030599|GO:0042545
Vivi6g04883 584 CDD PMEI-like_3 56 207 - -
Vivi6g04883 584 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Vivi6g04883 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 207 IPR035513 -
Vivi6g04883 584 FunFam Pectinesterase 50 206 - -
Vivi6g04883 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 206 IPR035513 -
Vivi6g04883 584 SMART PMEI_2 49 201 IPR006501 GO:0004857
Vivi6g04883 584 Gene3D - 255 574 IPR012334 -
Vivi6g04883 584 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Vivi6g04883 584 PANTHER PECTINESTERASE 17 564 - -
Vivi6g04883 584 NCBIfam pectinesterase inhibitor domain 30 205 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04883 Vivi-Chr6 152851715 152854249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04883 3 583 Carbohydrate Esterase AT3G05610 48.211 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04883 K01051 - gmx:100801686 872.848