Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g04882 ATGGCATTTCTTGTAAATTTCCTTTTTGTTCTCATCCTTTTTCCATCATTTGATCAGGTTCTCTCATTCCCAGATGAATTTCCCTCAGAAATGCAAACTCAAGACATGCAAGCTTTGATAGCGCAAGCCTGCATGGATATTGAAAACCAAAACTCGTGCCTCACAAACATTCATAACGAGCTCACAAAAACTGGCCCTCCGAGTCCGACTTCGGTCATTAATGCTGCACTCAGAACCACAATCAATGAAGCCATAGGTGCAATCAACAACATGACAAAGATCAGTACTTTTTCTGTTAATAACCGTGAGCAACTTGCGATAGAAGATTGCAAGGAGCTTCTCGATTTCTCTGTATCAGAGCTTGCATGGTCATTAGGTGAGATGAGGAAAATTCGAGCCGGCGACGGAACCGCGCAATATGAGGGAAACCTCGAAGCTTGGCTAAGCGCGGCACTTAGCAACCAAGACACGTGTATTGAAGGCTTCGAAGGCACTGATAGACGTCTCGAGAGTTACATTAGTGGAAGCTTAACACAAGTAACGCAGCTTATCAGTAATGTTCTGTCTTTGTACACTCAGCTTAATCGCCTACCCTTTAGGCCTCCAAGGAACACTACCCTGCACGAAACAAGCACTGATGAAAGCTTGGAGTTTCCTGAATGGATGACCGAGGCTGATCAAGAGCTTCTTAGATCTAAACCTCGCGGTGCAGTTGCAGATGCGGTTGTTGCGTTGGATGGGAGCGGTCACTACCGTACAATCAACGAGGCTCTTAATGCAGCTCCCAGTCATAGCAATAGGAGGCATGTTATCTATGTAAAGAAGGGAATTTACAAGGAGAATGTTGATATGAAGAAAAAGATGACCAACATCATGATAGTTGGTGACGGTATTGGCCAAACCATTATCACAAGCAATCGCAATTTCATGCAAGGATGGACCACTTTTCGAACTGCCACGTTTGCTGTATCTGGGAAGGGTTTCATTGCGAGGGACATGACATTCCGGAACACAGCTGGACCAGTAAACCATCAAGCCGTGGCACTGCGTGTGGATTCCGATCAATCTGCATTCTTTAGGTGTAGCGTAGAAGGACACCAAGACACACTTTACGCGCACTCGCTGAGACAATTCTACCGCGAATGTGAAATTTATGGAACCATAGACTTCATTTTTGGCAATGGAGCTGCTGTACTACAAAACTGCAAGATATACACAAGAGTCCCACTTCCATTACAAAAGGTCACAATCACAGCTCAAGGTAGGAAAAGTCCTCATCAAAGCACAGGGTTTACAATCCAAGATAGCTATGTTTTGGCCTCACAACCTACATATTTAGGAAGGCCATGGAAACAATATTCTAGAACAGTTTACATTAACACATACATGAGTCGTATGGTTCAACCTCGAGGTTGGCTCGAGTGGCTTGGAAACTTTGCATTGGACACTCTCTGGTACGGCGAATACAGAAACTATGGACCTGGTTCATCACTTGCCGGTAGGGTTAATTGGCCTGGTTATCATGTCATTAAAGACGCTTCTACCGCCGGTTACTTTACGGTTAACCGCTTCCTTAACGGCGGTTCATGGTTGCCTAGAACAGGTATCAAGTTCACAGCAGGGTTGAGCAACTGA 1635 0.4489 MAFLVNFLFVLILFPSFDQVLSFPDEFPSEMQTQDMQALIAQACMDIENQNSCLTNIHNELTKTGPPSPTSVINAALRTTINEAIGAINNMTKISTFSVNNREQLAIEDCKELLDFSVSELAWSLGEMRKIRAGDGTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLNRLPFRPPRNTTLHETSTDESLEFPEWMTEADQELLRSKPRGAVADAVVALDGSGHYRTINEALNAAPSHSNRRHVIYVKKGIYKENVDMKKKMTNIMIVGDGIGQTIITSNRNFMQGWTTFRTATFAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFFRCSVEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQPTYLGRPWKQYSRTVYINTYMSRMVQPRGWLEWLGNFALDTLWYGEYRNYGPGSSLAGRVNWPGYHVIKDASTAGYFTVNRFLNGGSWLPRTGIKFTAGLSN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g04882 544 SMART PMEI_2 35 190 IPR006501 GO:0004857
Vivi6g04882 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Vivi6g04882 544 FunFam Pectinesterase 37 196 - -
Vivi6g04882 544 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Vivi6g04882 544 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Vivi6g04882 544 CDD PMEI-like_4 53 195 - -
Vivi6g04882 544 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857
Vivi6g04882 544 FunFam Pectinesterase 235 542 - -
Vivi6g04882 544 SUPERFAMILY Pectin lyase-like 239 541 IPR011050 -
Vivi6g04882 544 PANTHER PECTINESTERASE 12 532 - -
Vivi6g04882 544 Pfam Pectinesterase 240 527 IPR000070 GO:0030599|GO:0042545
Vivi6g04882 544 Gene3D - 236 542 IPR012334 -
Vivi6g04882 544 NCBIfam pectinesterase inhibitor domain 4 194 IPR006501 GO:0004857
Vivi6g04882 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 194 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g04882 Vivi-Chr6 152849172 152851176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g04882 32 544 Carbohydrate Esterase AT3G05620 64.313 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g04882 K01051 - gmx:100810565 942.184